miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 5' -51.6 NC_006560.1 + 40056 0.68 0.964338
Target:  5'- cGGCGggGcGgGGaCGGGGAGGggaUGGCGu -3'
miRNA:   3'- cCCGCuuC-CaCC-GCCCUUUCa--AUUGU- -5'
30995 5' -51.6 NC_006560.1 + 75152 0.68 0.964338
Target:  5'- cGGCGgcGGUgcGGCGGGAGAa------ -3'
miRNA:   3'- cCCGCuuCCA--CCGCCCUUUcaauugu -5'
30995 5' -51.6 NC_006560.1 + 3220 0.68 0.960819
Target:  5'- aGGGCGgcGGcGGCGGGc--GgcGGCGu -3'
miRNA:   3'- -CCCGCuuCCaCCGCCCuuuCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 65118 0.68 0.960819
Target:  5'- gGGGCGGgccgcGGG-GGCGGcGAAAGacacGACGa -3'
miRNA:   3'- -CCCGCU-----UCCaCCGCC-CUUUCaa--UUGU- -5'
30995 5' -51.6 NC_006560.1 + 27290 0.68 0.960819
Target:  5'- gGGGCGcGGG-GcGCGGGGAGGg----- -3'
miRNA:   3'- -CCCGCuUCCaC-CGCCCUUUCaauugu -5'
30995 5' -51.6 NC_006560.1 + 43163 0.68 0.960819
Target:  5'- cGGCGucGAGGUgcccggccaGGCGGGggGGgcugaAGCAc -3'
miRNA:   3'- cCCGC--UUCCA---------CCGCCCuuUCaa---UUGU- -5'
30995 5' -51.6 NC_006560.1 + 69527 0.68 0.960819
Target:  5'- uGGCGAgccugcggcGGGcgcUGGUGGGAGAGUUc--- -3'
miRNA:   3'- cCCGCU---------UCC---ACCGCCCUUUCAAuugu -5'
30995 5' -51.6 NC_006560.1 + 107959 0.68 0.960454
Target:  5'- --aCGAAGGUGGCgugggccGGGGAGGgcGGCGc -3'
miRNA:   3'- cccGCUUCCACCG-------CCCUUUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 67145 0.68 0.957067
Target:  5'- cGGGgGggGGcggGGUGGGGuGGGgaGACGc -3'
miRNA:   3'- -CCCgCuuCCa--CCGCCCU-UUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 108792 0.68 0.957067
Target:  5'- aGGGCGAAGGcguaCGGGGAGGgcguguaGACGa -3'
miRNA:   3'- -CCCGCUUCCacc-GCCCUUUCaa-----UUGU- -5'
30995 5' -51.6 NC_006560.1 + 135387 0.68 0.953077
Target:  5'- gGGGCGGAGGccGCGGGGGuGUc---- -3'
miRNA:   3'- -CCCGCUUCCacCGCCCUUuCAauugu -5'
30995 5' -51.6 NC_006560.1 + 130098 0.68 0.953077
Target:  5'- uGGGCGAggacGGGcUGGCGuGGGccGAGgagAGCGu -3'
miRNA:   3'- -CCCGCU----UCC-ACCGC-CCU--UUCaa-UUGU- -5'
30995 5' -51.6 NC_006560.1 + 93306 0.68 0.953077
Target:  5'- uGGCaacGggGGUGGgGGGAAAa-UAGCGg -3'
miRNA:   3'- cCCG---CuuCCACCgCCCUUUcaAUUGU- -5'
30995 5' -51.6 NC_006560.1 + 33483 0.68 0.953077
Target:  5'- cGGCGggGGgccgccGGCaGGGAGGcgGGCGc -3'
miRNA:   3'- cCCGCuuCCa-----CCGcCCUUUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 33381 0.68 0.953077
Target:  5'- gGGGCcgcggaGAGG-GGCGGGGAgaGGggGGCGc -3'
miRNA:   3'- -CCCGc-----UUCCaCCGCCCUU--UCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 8198 0.69 0.948844
Target:  5'- gGGGaGAGGGauucGGCGGGgGGAGggGACGc -3'
miRNA:   3'- -CCCgCUUCCa---CCGCCC-UUUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 30281 0.69 0.948844
Target:  5'- gGGGaGggGaGUGGUGGGGAGGguguuGCu -3'
miRNA:   3'- -CCCgCuuC-CACCGCCCUUUCaau--UGu -5'
30995 5' -51.6 NC_006560.1 + 62608 0.69 0.948844
Target:  5'- aGGGCGGA---GGCGGGGAGGgu-GCc -3'
miRNA:   3'- -CCCGCUUccaCCGCCCUUUCaauUGu -5'
30995 5' -51.6 NC_006560.1 + 135994 0.69 0.944366
Target:  5'- uGGCGGccGGG-GGCGGGAccGagGACGg -3'
miRNA:   3'- cCCGCU--UCCaCCGCCCUuuCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 14202 0.69 0.944366
Target:  5'- aGGGCGuGGGGUGGuCGGGcgGGgcgcccGCGg -3'
miRNA:   3'- -CCCGC-UUCCACC-GCCCuuUCaau---UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.