miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 5' -51.6 NC_006560.1 + 56568 0.67 0.973556
Target:  5'- gGGaGCGAGGGUcgguccggGGCGGGAucG---GCAg -3'
miRNA:   3'- -CC-CGCUUCCA--------CCGCCCUuuCaauUGU- -5'
30995 5' -51.6 NC_006560.1 + 33045 0.67 0.973556
Target:  5'- gGGGuCGcGGGgaaGGCGGGGAAGg----- -3'
miRNA:   3'- -CCC-GCuUCCa--CCGCCCUUUCaauugu -5'
30995 5' -51.6 NC_006560.1 + 117221 0.67 0.973556
Target:  5'- cGGCGucGG-GGCGGauGAAGUUGGCc -3'
miRNA:   3'- cCCGCuuCCaCCGCCc-UUUCAAUUGu -5'
30995 5' -51.6 NC_006560.1 + 55331 0.68 0.9707
Target:  5'- gGGGCGggGGcucgUGGCGGccguGGUgcuccAGCAc -3'
miRNA:   3'- -CCCGCuuCC----ACCGCCcuu-UCAa----UUGU- -5'
30995 5' -51.6 NC_006560.1 + 54355 0.68 0.9707
Target:  5'- cGGGUGGgguGGGUggGGUGGGGAAGa----- -3'
miRNA:   3'- -CCCGCU---UCCA--CCGCCCUUUCaauugu -5'
30995 5' -51.6 NC_006560.1 + 55432 0.68 0.9707
Target:  5'- aGGGCGGAGcgcaGGCGGGcGAGcccggGGCGc -3'
miRNA:   3'- -CCCGCUUCca--CCGCCCuUUCaa---UUGU- -5'
30995 5' -51.6 NC_006560.1 + 59426 0.68 0.969802
Target:  5'- gGGGCccggugcggacgagGggGGUGcGuCGGGAGGGcgGGCGg -3'
miRNA:   3'- -CCCG--------------CuuCCAC-C-GCCCUUUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 3368 0.68 0.96763
Target:  5'- cGGCGucGGcgGGCGGGcgGGcgGGCGc -3'
miRNA:   3'- cCCGCuuCCa-CCGCCCuuUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 87875 0.68 0.96763
Target:  5'- gGGGCGcGGGUGGgGGGGc-------- -3'
miRNA:   3'- -CCCGCuUCCACCgCCCUuucaauugu -5'
30995 5' -51.6 NC_006560.1 + 82622 0.68 0.96763
Target:  5'- cGGCGGcuGGGcGGCGGGGgcGUUcGACc -3'
miRNA:   3'- cCCGCU--UCCaCCGCCCUuuCAA-UUGu -5'
30995 5' -51.6 NC_006560.1 + 33184 0.68 0.96763
Target:  5'- cGGgGAAGGggcccGCGGGGAAGgcGGCc -3'
miRNA:   3'- cCCgCUUCCac---CGCCCUUUCaaUUGu -5'
30995 5' -51.6 NC_006560.1 + 20546 0.68 0.96763
Target:  5'- cGGCGAGGGcGGgGGGcuGGGGUUcGCc -3'
miRNA:   3'- cCCGCUUCCaCCgCCC--UUUCAAuUGu -5'
30995 5' -51.6 NC_006560.1 + 6010 0.68 0.96763
Target:  5'- aGGGgGAAGGgcagggGGCagGGGGAAGg--GCGa -3'
miRNA:   3'- -CCCgCUUCCa-----CCG--CCCUUUCaauUGU- -5'
30995 5' -51.6 NC_006560.1 + 39926 0.68 0.964338
Target:  5'- cGGGUGGcuGGGUGGCuGGGGcccgucGGUaGGCGg -3'
miRNA:   3'- -CCCGCU--UCCACCG-CCCUu-----UCAaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 102861 0.68 0.964338
Target:  5'- uGGCGAgccGGGcgcgcGGCGGGguGGUUAAa- -3'
miRNA:   3'- cCCGCU---UCCa----CCGCCCuuUCAAUUgu -5'
30995 5' -51.6 NC_006560.1 + 139312 0.68 0.964338
Target:  5'- uGGGCGccucGGGc-GCGGGAGAGgcgGGCGc -3'
miRNA:   3'- -CCCGCu---UCCacCGCCCUUUCaa-UUGU- -5'
30995 5' -51.6 NC_006560.1 + 139544 0.68 0.964338
Target:  5'- gGGGCGggGGcggaagGGCGuGGu-GGgcGACGa -3'
miRNA:   3'- -CCCGCuuCCa-----CCGC-CCuuUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 146064 0.68 0.964338
Target:  5'- gGGGCGGccucgGGGaGGCGGGAgcGgcgGGCc -3'
miRNA:   3'- -CCCGCU-----UCCaCCGCCCUuuCaa-UUGu -5'
30995 5' -51.6 NC_006560.1 + 40056 0.68 0.964338
Target:  5'- cGGCGggGcGgGGaCGGGGAGGggaUGGCGu -3'
miRNA:   3'- cCCGCuuC-CaCC-GCCCUUUCa--AUUGU- -5'
30995 5' -51.6 NC_006560.1 + 71345 0.68 0.964338
Target:  5'- cGGGgGAGGGggcGGCGGGcgGcGgaAACAc -3'
miRNA:   3'- -CCCgCUUCCa--CCGCCCuuU-CaaUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.