miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 5' -51.6 NC_006560.1 + 26625 0.67 0.98091
Target:  5'- cGGGgGggGG-GGaCGGGGccgcggGGGggGACGg -3'
miRNA:   3'- -CCCgCuuCCaCC-GCCCU------UUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 116252 0.67 0.98091
Target:  5'- gGGGCGAGGGUcuCGGuGAGGUUGuCGa -3'
miRNA:   3'- -CCCGCUUCCAccGCCcUUUCAAUuGU- -5'
30995 5' -51.6 NC_006560.1 + 28418 0.67 0.98091
Target:  5'- gGGGCGGGccGG-GGCGGGccGAGGggGAg- -3'
miRNA:   3'- -CCCGCUU--CCaCCGCCC--UUUCaaUUgu -5'
30995 5' -51.6 NC_006560.1 + 34562 0.67 0.98091
Target:  5'- gGGGCGGccggGGGUGcGCgacgGGGAGAGaccGGCGg -3'
miRNA:   3'- -CCCGCU----UCCAC-CG----CCCUUUCaa-UUGU- -5'
30995 5' -51.6 NC_006560.1 + 146462 0.67 0.98091
Target:  5'- cGGCGGAGGa-GCGGGggGcggAGCGg -3'
miRNA:   3'- cCCGCUUCCacCGCCCuuUcaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 17736 0.67 0.978653
Target:  5'- gGGGCGGguuauaaaAGGUcuccGGUGGGAAcAGgcAGCGg -3'
miRNA:   3'- -CCCGCU--------UCCA----CCGCCCUU-UCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 34059 0.67 0.978653
Target:  5'- gGGGUG-AGGaGGgGGGcGAGggGACGa -3'
miRNA:   3'- -CCCGCuUCCaCCgCCCuUUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 35535 0.67 0.978653
Target:  5'- aGGGCccgcgcGG-GGCGGGggGGccGGCAa -3'
miRNA:   3'- -CCCGcuu---CCaCCGCCCuuUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 15057 0.67 0.978653
Target:  5'- gGGGCGAcGGcgucGGUGGGggGcGggGGCu -3'
miRNA:   3'- -CCCGCUuCCa---CCGCCCuuU-CaaUUGu -5'
30995 5' -51.6 NC_006560.1 + 132720 0.67 0.978653
Target:  5'- cGGCuGggGGcGGCGGGAAGag-GGCc -3'
miRNA:   3'- cCCG-CuuCCaCCGCCCUUUcaaUUGu -5'
30995 5' -51.6 NC_006560.1 + 137246 0.67 0.978417
Target:  5'- gGGGCGcGGGcGGCGGGcgacgccGAGUUcccggagGACGa -3'
miRNA:   3'- -CCCGCuUCCaCCGCCCu------UUCAA-------UUGU- -5'
30995 5' -51.6 NC_006560.1 + 14808 0.67 0.976204
Target:  5'- gGGGCucGGG-GGCcGGAGGGUcAGCGg -3'
miRNA:   3'- -CCCGcuUCCaCCGcCCUUUCAaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 22340 0.67 0.976204
Target:  5'- -cGCGGAGcucgcGGCGGGGGAGgagGACGa -3'
miRNA:   3'- ccCGCUUCca---CCGCCCUUUCaa-UUGU- -5'
30995 5' -51.6 NC_006560.1 + 33414 0.67 0.976204
Target:  5'- cGGGCGggGaGcgccGGCGGGAGgAGggGGg- -3'
miRNA:   3'- -CCCGCuuC-Ca---CCGCCCUU-UCaaUUgu -5'
30995 5' -51.6 NC_006560.1 + 93990 0.67 0.976204
Target:  5'- cGGgGAGGG-GGcCGGGgcGGggGACGu -3'
miRNA:   3'- cCCgCUUCCaCC-GCCCuuUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 100840 0.67 0.976204
Target:  5'- cGGCGGAGG-GGaGGGgcGGUgucggGACGg -3'
miRNA:   3'- cCCGCUUCCaCCgCCCuuUCAa----UUGU- -5'
30995 5' -51.6 NC_006560.1 + 134708 0.67 0.976204
Target:  5'- cGGCGggGGUGGUaGaAGAGgcAACGc -3'
miRNA:   3'- cCCGCuuCCACCGcCcUUUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 32528 0.67 0.97464
Target:  5'- aGGGCGccccccAGGGaGGCGGGGAgugcggccccccccaGGggGGCGg -3'
miRNA:   3'- -CCCGC------UUCCaCCGCCCUU---------------UCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 33045 0.67 0.973556
Target:  5'- gGGGuCGcGGGgaaGGCGGGGAAGg----- -3'
miRNA:   3'- -CCC-GCuUCCa--CCGCCCUUUCaauugu -5'
30995 5' -51.6 NC_006560.1 + 56568 0.67 0.973556
Target:  5'- gGGaGCGAGGGUcgguccggGGCGGGAucG---GCAg -3'
miRNA:   3'- -CC-CGCUUCCA--------CCGCCCUuuCaauUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.