miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 5' -51.6 NC_006560.1 + 12013 0.71 0.87856
Target:  5'- aGGGCGAAGGcgacggcgUGGCGGcGggGGc--ACGc -3'
miRNA:   3'- -CCCGCUUCC--------ACCGCC-CuuUCaauUGU- -5'
30995 5' -51.6 NC_006560.1 + 12711 0.71 0.863438
Target:  5'- cGGCGggGGUgggGGCGGGGcccuGGauggUGACGu -3'
miRNA:   3'- cCCGCuuCCA---CCGCCCUu---UCa---AUUGU- -5'
30995 5' -51.6 NC_006560.1 + 14202 0.69 0.944366
Target:  5'- aGGGCGuGGGGUGGuCGGGcgGGgcgcccGCGg -3'
miRNA:   3'- -CCCGC-UUCCACC-GCCCuuUCaau---UGU- -5'
30995 5' -51.6 NC_006560.1 + 14374 0.66 0.984883
Target:  5'- gGGGCGAGGcGaGGCGGGGc----GACGa -3'
miRNA:   3'- -CCCGCUUC-CaCCGCCCUuucaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 14726 0.66 0.986616
Target:  5'- cGGGCG-AGGcGGUGaGGAAcGgaAACAg -3'
miRNA:   3'- -CCCGCuUCCaCCGC-CCUUuCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 14758 0.74 0.726306
Target:  5'- uGGUGggGGggcucGGCGGGAGGGgugggGGCGg -3'
miRNA:   3'- cCCGCuuCCa----CCGCCCUUUCaa---UUGU- -5'
30995 5' -51.6 NC_006560.1 + 14808 0.67 0.976204
Target:  5'- gGGGCucGGG-GGCcGGAGGGUcAGCGg -3'
miRNA:   3'- -CCCGcuUCCaCCGcCCUUUCAaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 14865 0.7 0.918207
Target:  5'- cGGGCGccGGgggGGCGGGGAgaGGUc---- -3'
miRNA:   3'- -CCCGCuuCCa--CCGCCCUU--UCAauugu -5'
30995 5' -51.6 NC_006560.1 + 15057 0.67 0.978653
Target:  5'- gGGGCGAcGGcgucGGUGGGggGcGggGGCu -3'
miRNA:   3'- -CCCGCUuCCa---CCGCCCuuU-CaaUUGu -5'
30995 5' -51.6 NC_006560.1 + 17736 0.67 0.978653
Target:  5'- gGGGCGGguuauaaaAGGUcuccGGUGGGAAcAGgcAGCGg -3'
miRNA:   3'- -CCCGCU--------UCCA----CCGCCCUU-UCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 20546 0.68 0.96763
Target:  5'- cGGCGAGGGcGGgGGGcuGGGGUUcGCc -3'
miRNA:   3'- cCCGCUUCCaCCgCCC--UUUCAAuUGu -5'
30995 5' -51.6 NC_006560.1 + 20608 0.66 0.984883
Target:  5'- uGGCGcGGGUGGUGGGGc-------- -3'
miRNA:   3'- cCCGCuUCCACCGCCCUuucaauugu -5'
30995 5' -51.6 NC_006560.1 + 20995 0.73 0.813004
Target:  5'- cGGCGggGGaagGGCGGGgcGGcgGGCc -3'
miRNA:   3'- cCCGCuuCCa--CCGCCCuuUCaaUUGu -5'
30995 5' -51.6 NC_006560.1 + 22340 0.67 0.976204
Target:  5'- -cGCGGAGcucgcGGCGGGGGAGgagGACGa -3'
miRNA:   3'- ccCGCUUCca---CCGCCCUUUCaa-UUGU- -5'
30995 5' -51.6 NC_006560.1 + 25633 0.69 0.929429
Target:  5'- gGGGgGAGGGggggaGGgGGGGAGGggGAgAg -3'
miRNA:   3'- -CCCgCUUCCa----CCgCCCUUUCaaUUgU- -5'
30995 5' -51.6 NC_006560.1 + 25804 0.67 0.973556
Target:  5'- gGGGCGcgcgagggggaaGAGG-GGagagGGGAGAGggGACGg -3'
miRNA:   3'- -CCCGC------------UUCCaCCg---CCCUUUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 25954 0.7 0.899487
Target:  5'- gGGGCGAGGGccGCGGGggGcGagGGCc -3'
miRNA:   3'- -CCCGCUUCCacCGCCCuuU-CaaUUGu -5'
30995 5' -51.6 NC_006560.1 + 25986 0.73 0.785328
Target:  5'- gGGGCGAGGGccGCGGGggGaggGGCGc -3'
miRNA:   3'- -CCCGCUUCCacCGCCCuuUcaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 26355 0.7 0.912217
Target:  5'- aGGGCGGAGacGGCGGGGcgGAGacGGCGc -3'
miRNA:   3'- -CCCGCUUCcaCCGCCCU--UUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 26504 0.7 0.918207
Target:  5'- cGGGCGcgcGAGGgGGCGGGGGccguGGgcgGGCGc -3'
miRNA:   3'- -CCCGC---UUCCaCCGCCCUU----UCaa-UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.