miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 5' -51.6 NC_006560.1 + 22 0.75 0.695498
Target:  5'- gGGGCGGuucGGcGGCGGGggGGgu-GCGu -3'
miRNA:   3'- -CCCGCUu--CCaCCGCCCuuUCaauUGU- -5'
30995 5' -51.6 NC_006560.1 + 1868 0.78 0.528584
Target:  5'- cGGGCGggGGUcgcgGGCGGGGGucgcGGgcGGCGg -3'
miRNA:   3'- -CCCGCuuCCA----CCGCCCUU----UCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 2922 0.69 0.939638
Target:  5'- aGGCGGGcGG-GGCGGGGGAGa----- -3'
miRNA:   3'- cCCGCUU-CCaCCGCCCUUUCaauugu -5'
30995 5' -51.6 NC_006560.1 + 3220 0.68 0.960819
Target:  5'- aGGGCGgcGGcGGCGGGc--GgcGGCGu -3'
miRNA:   3'- -CCCGCuuCCaCCGCCCuuuCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 3323 0.66 0.990911
Target:  5'- cGGGcCGggGGcgcgGGCGGGcgGcGUcGGCGu -3'
miRNA:   3'- -CCC-GCuuCCa---CCGCCCuuU-CAaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 3368 0.68 0.96763
Target:  5'- cGGCGucGGcgGGCGGGcgGGcgGGCGc -3'
miRNA:   3'- cCCGCuuCCa-CCGCCCuuUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 5493 0.73 0.794712
Target:  5'- cGGCGAGGGUcGGCGGcggucgcggcGAGGGUcGGCGg -3'
miRNA:   3'- cCCGCUUCCA-CCGCC----------CUUUCAaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 5802 0.69 0.929429
Target:  5'- aGGGgGAAGGgcagggGGCaggGGGAAGGgcagggGGCAg -3'
miRNA:   3'- -CCCgCUUCCa-----CCG---CCCUUUCaa----UUGU- -5'
30995 5' -51.6 NC_006560.1 + 5840 0.69 0.929429
Target:  5'- aGGGgGAAGGgcagggGGCaggGGGAAGGgcagggGGCAg -3'
miRNA:   3'- -CCCgCUUCCa-----CCG---CCCUUUCaa----UUGU- -5'
30995 5' -51.6 NC_006560.1 + 5878 0.69 0.929429
Target:  5'- aGGGgGAAGGgcagggGGCaggGGGAAGGgcagggGGCAg -3'
miRNA:   3'- -CCCgCUUCCa-----CCG---CCCUUUCaa----UUGU- -5'
30995 5' -51.6 NC_006560.1 + 5916 0.69 0.929429
Target:  5'- aGGGgGAAGGgcagggGGCaggGGGAAGGgcagggGGCAg -3'
miRNA:   3'- -CCCgCUUCCa-----CCG---CCCUUUCaa----UUGU- -5'
30995 5' -51.6 NC_006560.1 + 5973 0.7 0.899487
Target:  5'- aGGGgGAAGGgcaggGGCaggGGGAAGGgcagggGGCAg -3'
miRNA:   3'- -CCCgCUUCCa----CCG---CCCUUUCaa----UUGU- -5'
30995 5' -51.6 NC_006560.1 + 6010 0.68 0.96763
Target:  5'- aGGGgGAAGGgcagggGGCagGGGGAAGg--GCGa -3'
miRNA:   3'- -CCCgCUUCCa-----CCG--CCCUUUCaauUGU- -5'
30995 5' -51.6 NC_006560.1 + 8198 0.69 0.948844
Target:  5'- gGGGaGAGGGauucGGCGGGgGGAGggGACGc -3'
miRNA:   3'- -CCCgCUUCCa---CCGCCC-UUUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 8875 0.74 0.766132
Target:  5'- gGGGUGggGGaGGCGGGggGcUUcGCGc -3'
miRNA:   3'- -CCCGCuuCCaCCGCCCuuUcAAuUGU- -5'
30995 5' -51.6 NC_006560.1 + 9076 0.66 0.989621
Target:  5'- aGGGgGAGGGgcGGCGGGGcgacGGcggAGCGc -3'
miRNA:   3'- -CCCgCUUCCa-CCGCCCUu---UCaa-UUGU- -5'
30995 5' -51.6 NC_006560.1 + 10209 0.71 0.871113
Target:  5'- gGGGUGggGGUGGggguaGGGGuagGGGUgGGCGg -3'
miRNA:   3'- -CCCGCuuCCACCg----CCCU---UUCAaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 11103 0.85 0.235271
Target:  5'- gGGGCGGAGGagGGCGGGggGGgggGGCu -3'
miRNA:   3'- -CCCGCUUCCa-CCGCCCuuUCaa-UUGu -5'
30995 5' -51.6 NC_006560.1 + 11602 0.67 0.973556
Target:  5'- gGGGuUGggGGagaccGGCGGGGGAGUc---- -3'
miRNA:   3'- -CCC-GCuuCCa----CCGCCCUUUCAauugu -5'
30995 5' -51.6 NC_006560.1 + 11643 0.71 0.871113
Target:  5'- cGGCGGuccGGGcgGGCGGGGGAGUc---- -3'
miRNA:   3'- cCCGCU---UCCa-CCGCCCUUUCAauugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.