miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 5' -51.6 NC_006560.1 + 141721 1.12 0.005291
Target:  5'- gGGGCGAAGGUGGCGGGAAAGUUAACAa -3'
miRNA:   3'- -CCCGCUUCCACCGCCCUUUCAAUUGU- -5'
30995 5' -51.6 NC_006560.1 + 11103 0.85 0.235271
Target:  5'- gGGGCGGAGGagGGCGGGggGGgggGGCu -3'
miRNA:   3'- -CCCGCUUCCa-CCGCCCuuUCaa-UUGu -5'
30995 5' -51.6 NC_006560.1 + 32977 0.8 0.413347
Target:  5'- aGGGCaGggGGgugGGCGGGAAGGccGGCGa -3'
miRNA:   3'- -CCCG-CuuCCa--CCGCCCUUUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 33007 0.8 0.413347
Target:  5'- aGGGCaGggGGgugGGCGGGAAGGccGGCGa -3'
miRNA:   3'- -CCCG-CuuCCa--CCGCCCUUUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 147913 0.78 0.528584
Target:  5'- gGGGCGggGGcGG-GGGAGAGggGGCc -3'
miRNA:   3'- -CCCGCuuCCaCCgCCCUUUCaaUUGu -5'
30995 5' -51.6 NC_006560.1 + 1868 0.78 0.528584
Target:  5'- cGGGCGggGGUcgcgGGCGGGGGucgcGGgcGGCGg -3'
miRNA:   3'- -CCCGCuuCCA----CCGCCCUU----UCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 35958 0.78 0.549024
Target:  5'- cGGGCGcGGG-GGCGGGGcuuGUUAACu -3'
miRNA:   3'- -CCCGCuUCCaCCGCCCUuu-CAAUUGu -5'
30995 5' -51.6 NC_006560.1 + 26976 0.78 0.549024
Target:  5'- gGGGCGggGGggGGCGGGcgcacgggcgGAAGggGACc -3'
miRNA:   3'- -CCCGCuuCCa-CCGCCC----------UUUCaaUUGu -5'
30995 5' -51.6 NC_006560.1 + 33821 0.77 0.580117
Target:  5'- gGGGCGggGGUcGGCGGG--GGUcGGCc -3'
miRNA:   3'- -CCCGCuuCCA-CCGCCCuuUCAaUUGu -5'
30995 5' -51.6 NC_006560.1 + 33070 0.76 0.611563
Target:  5'- cGGcCGAGGGgaaGGCGGGGAAGgcgGGCGa -3'
miRNA:   3'- cCC-GCUUCCa--CCGCCCUUUCaa-UUGU- -5'
30995 5' -51.6 NC_006560.1 + 140476 0.76 0.632621
Target:  5'- cGGGcCGggGG-GGCGGaGGAGGUgggGGCGg -3'
miRNA:   3'- -CCC-GCuuCCaCCGCC-CUUUCAa--UUGU- -5'
30995 5' -51.6 NC_006560.1 + 32783 0.76 0.643154
Target:  5'- aGGGCGAGGGggagGGgGGGGccGggGGCGc -3'
miRNA:   3'- -CCCGCUUCCa---CCgCCCUuuCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 22 0.75 0.695498
Target:  5'- gGGGCGGuucGGcGGCGGGggGGgu-GCGu -3'
miRNA:   3'- -CCCGCUu--CCaCCGCCCuuUCaauUGU- -5'
30995 5' -51.6 NC_006560.1 + 150351 0.75 0.695498
Target:  5'- gGGGCGGuucGGcGGCGGGggGGgu-GCGu -3'
miRNA:   3'- -CCCGCUu--CCaCCGCCCuuUCaauUGU- -5'
30995 5' -51.6 NC_006560.1 + 47832 0.75 0.695498
Target:  5'- cGGGUGGAuGGgGGCGGGGAGGUc-ACGg -3'
miRNA:   3'- -CCCGCUU-CCaCCGCCCUUUCAauUGU- -5'
30995 5' -51.6 NC_006560.1 + 120772 0.75 0.716109
Target:  5'- gGGGCGAGGGgaggggaggGGCGGGGGAacucacguugguGUUGugGc -3'
miRNA:   3'- -CCCGCUUCCa--------CCGCCCUUU------------CAAUugU- -5'
30995 5' -51.6 NC_006560.1 + 14758 0.74 0.726306
Target:  5'- uGGUGggGGggcucGGCGGGAGGGgugggGGCGg -3'
miRNA:   3'- cCCGCuuCCa----CCGCCCUUUCaa---UUGU- -5'
30995 5' -51.6 NC_006560.1 + 104775 0.74 0.746431
Target:  5'- cGGGCGggGGc-GCGGGggGG--AGCGg -3'
miRNA:   3'- -CCCGCuuCCacCGCCCuuUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 33100 0.74 0.75634
Target:  5'- aGGGCagGggGGUcGCGGGGAAGgcGGCc -3'
miRNA:   3'- -CCCG--CuuCCAcCGCCCUUUCaaUUGu -5'
30995 5' -51.6 NC_006560.1 + 8875 0.74 0.766132
Target:  5'- gGGGUGggGGaGGCGGGggGcUUcGCGc -3'
miRNA:   3'- -CCCGCuuCCaCCGCCCuuUcAAuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.