miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 5' -51.6 NC_006560.1 + 8875 0.74 0.766132
Target:  5'- gGGGUGggGGaGGCGGGggGcUUcGCGc -3'
miRNA:   3'- -CCCGCuuCCaCCGCCCuuUcAAuUGU- -5'
30995 5' -51.6 NC_006560.1 + 32088 0.73 0.785328
Target:  5'- cGGGCGggGGcGGCaGGugGGgcGGCAg -3'
miRNA:   3'- -CCCGCuuCCaCCGcCCuuUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 25986 0.73 0.785328
Target:  5'- gGGGCGAGGGccGCGGGggGaggGGCGc -3'
miRNA:   3'- -CCCGCUUCCacCGCCCuuUcaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 5493 0.73 0.794712
Target:  5'- cGGCGAGGGUcGGCGGcggucgcggcGAGGGUcGGCGg -3'
miRNA:   3'- cCCGCUUCCA-CCGCC----------CUUUCAaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 85561 0.73 0.794712
Target:  5'- gGGGCGggGGcGGCucgGGGgcGGggGGCGc -3'
miRNA:   3'- -CCCGCuuCCaCCG---CCCuuUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 147056 0.73 0.80394
Target:  5'- cGGCGggGGgaGGCGGGcggcGAGUcGGCGa -3'
miRNA:   3'- cCCGCuuCCa-CCGCCCu---UUCAaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 54986 0.73 0.80394
Target:  5'- uGGGCGGAGGccucgGGCGGaucGAGggGGCGg -3'
miRNA:   3'- -CCCGCUUCCa----CCGCCcu-UUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 20995 0.73 0.813004
Target:  5'- cGGCGggGGaagGGCGGGgcGGcgGGCc -3'
miRNA:   3'- cCCGCuuCCa--CCGCCCuuUCaaUUGu -5'
30995 5' -51.6 NC_006560.1 + 99302 0.72 0.821894
Target:  5'- cGGgGGAGGUGGUGGGGcgcGggGGCGu -3'
miRNA:   3'- cCCgCUUCCACCGCCCUuu-CaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 137168 0.72 0.830601
Target:  5'- gGGGCGGAGGgcgcggagGGCGcGGAGGGc--GCGg -3'
miRNA:   3'- -CCCGCUUCCa-------CCGC-CCUUUCaauUGU- -5'
30995 5' -51.6 NC_006560.1 + 33708 0.72 0.830601
Target:  5'- gGGGCGggGa-GGCGGGGGAGa----- -3'
miRNA:   3'- -CCCGCuuCcaCCGCCCUUUCaauugu -5'
30995 5' -51.6 NC_006560.1 + 33270 0.72 0.830601
Target:  5'- gGGGuCGggGGccugGGCGGcGggGGUUGGg- -3'
miRNA:   3'- -CCC-GCuuCCa---CCGCC-CuuUCAAUUgu -5'
30995 5' -51.6 NC_006560.1 + 34181 0.72 0.839117
Target:  5'- aGGGCGGgggggagaugGGGUGGuCGGGggGacGggGGCGg -3'
miRNA:   3'- -CCCGCU----------UCCACC-GCCCuuU--CaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 29478 0.72 0.839117
Target:  5'- aGGGgGAGGGaGGgGGGAAGGggcGCGu -3'
miRNA:   3'- -CCCgCUUCCaCCgCCCUUUCaauUGU- -5'
30995 5' -51.6 NC_006560.1 + 30523 0.72 0.839117
Target:  5'- aGGGgGAGGGggcGGgGGGAGAGggAGgGa -3'
miRNA:   3'- -CCCgCUUCCa--CCgCCCUUUCaaUUgU- -5'
30995 5' -51.6 NC_006560.1 + 147289 0.72 0.839117
Target:  5'- cGGGCGggGGgcucUGGCGGGcgccg-GGCGg -3'
miRNA:   3'- -CCCGCuuCC----ACCGCCCuuucaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 36360 0.72 0.847433
Target:  5'- aGGGgGAGGGggaGGgGGGAGGGggGAgGg -3'
miRNA:   3'- -CCCgCUUCCa--CCgCCCUUUCaaUUgU- -5'
30995 5' -51.6 NC_006560.1 + 12711 0.71 0.863438
Target:  5'- cGGCGggGGUgggGGCGGGGcccuGGauggUGACGu -3'
miRNA:   3'- cCCGCuuCCA---CCGCCCUu---UCa---AUUGU- -5'
30995 5' -51.6 NC_006560.1 + 11643 0.71 0.871113
Target:  5'- cGGCGGuccGGGcgGGCGGGGGAGUc---- -3'
miRNA:   3'- cCCGCU---UCCa-CCGCCCUUUCAauugu -5'
30995 5' -51.6 NC_006560.1 + 10209 0.71 0.871113
Target:  5'- gGGGUGggGGUGGggguaGGGGuagGGGUgGGCGg -3'
miRNA:   3'- -CCCGCuuCCACCg----CCCU---UUCAaUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.