miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 3' -57.5 NC_006560.1 + 3768 0.67 0.805006
Target:  5'- -gGCGCCGcgCGGCGGGAccgcggcgcgcgcGGccgCCAGc -3'
miRNA:   3'- agUGCGGCa-GCCGCCCU-------------UCua-GGUCu -5'
30996 3' -57.5 NC_006560.1 + 27678 0.67 0.797097
Target:  5'- cUCGCccGCCGUCGGuCGGGguGcgCCGc- -3'
miRNA:   3'- -AGUG--CGGCAGCC-GCCCuuCuaGGUcu -5'
30996 3' -57.5 NC_006560.1 + 47853 0.67 0.797097
Target:  5'- gUCACGggguCCGgCGGCGGGccgGGGGUCgGGGu -3'
miRNA:   3'- -AGUGC----GGCaGCCGCCC---UUCUAGgUCU- -5'
30996 3' -57.5 NC_006560.1 + 74305 0.68 0.788172
Target:  5'- cCACGCgGcCGGCGGGGAcGAcgCCGc- -3'
miRNA:   3'- aGUGCGgCaGCCGCCCUU-CUa-GGUcu -5'
30996 3' -57.5 NC_006560.1 + 57248 0.68 0.788172
Target:  5'- gCACGCgGcgCGGgGGGGccucgGGGUCCGGc -3'
miRNA:   3'- aGUGCGgCa-GCCgCCCU-----UCUAGGUCu -5'
30996 3' -57.5 NC_006560.1 + 28341 0.68 0.779111
Target:  5'- -gGCGCCGcccggcuccuccccgCGGCGGGGAGGagccgccgccgucUCCGGc -3'
miRNA:   3'- agUGCGGCa--------------GCCGCCCUUCU-------------AGGUCu -5'
30996 3' -57.5 NC_006560.1 + 32946 0.68 0.779111
Target:  5'- gUCGcCGCCGgCGGCgacGGGAAGG-CCGGc -3'
miRNA:   3'- -AGU-GCGGCaGCCG---CCCUUCUaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 5345 0.68 0.769923
Target:  5'- -gGCGUCcUCGGCGGGccGucGUCCGGGu -3'
miRNA:   3'- agUGCGGcAGCCGCCCuuC--UAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 99485 0.68 0.769923
Target:  5'- gCGCGCCGccCGGCGGa---GUCCGGGg -3'
miRNA:   3'- aGUGCGGCa-GCCGCCcuucUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 13041 0.68 0.760616
Target:  5'- gCAgGCCGUCGGgGGGAuGcgCagCGGAa -3'
miRNA:   3'- aGUgCGGCAGCCgCCCUuCuaG--GUCU- -5'
30996 3' -57.5 NC_006560.1 + 77848 0.68 0.760616
Target:  5'- cUCACGCUccccgCGGCGuGGGAGAcgggggCCGGGg -3'
miRNA:   3'- -AGUGCGGca---GCCGC-CCUUCUa-----GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 10854 0.68 0.760616
Target:  5'- aCGCGCgCGUCGcuagcgaccggaGCGGGGAacGAUCCAc- -3'
miRNA:   3'- aGUGCG-GCAGC------------CGCCCUU--CUAGGUcu -5'
30996 3' -57.5 NC_006560.1 + 98434 0.68 0.760616
Target:  5'- gCGCGCCGcuggcgggCGGCGGcGAGGAcggCgCGGAg -3'
miRNA:   3'- aGUGCGGCa-------GCCGCC-CUUCUa--G-GUCU- -5'
30996 3' -57.5 NC_006560.1 + 15241 0.68 0.760616
Target:  5'- cCGCgGCCGgugCGGuCGGGGAGGcggacgCCGGGg -3'
miRNA:   3'- aGUG-CGGCa--GCC-GCCCUUCUa-----GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 100802 0.68 0.751199
Target:  5'- -gGgGCCGUCGGCGGGGgccauagcgcgGGcgCgGGGg -3'
miRNA:   3'- agUgCGGCAGCCGCCCU-----------UCuaGgUCU- -5'
30996 3' -57.5 NC_006560.1 + 140362 0.68 0.741681
Target:  5'- -gGCGUCGgcgCGGCGcGGcccGAGGUCCGGu -3'
miRNA:   3'- agUGCGGCa--GCCGC-CC---UUCUAGGUCu -5'
30996 3' -57.5 NC_006560.1 + 26776 0.68 0.741681
Target:  5'- cCGCGugcCCG-CGGCGcGGAGGAgCCGGGg -3'
miRNA:   3'- aGUGC---GGCaGCCGC-CCUUCUaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 18886 0.68 0.741681
Target:  5'- gCcCGCCGUgGGCGGcGGAGAcagagccgcaUCCGGc -3'
miRNA:   3'- aGuGCGGCAgCCGCC-CUUCU----------AGGUCu -5'
30996 3' -57.5 NC_006560.1 + 2796 0.68 0.741681
Target:  5'- gCGCGCCcagcgccgagacGUCGGgGGGcccGGUCCAGu -3'
miRNA:   3'- aGUGCGG------------CAGCCgCCCuu-CUAGGUCu -5'
30996 3' -57.5 NC_006560.1 + 81463 0.68 0.741681
Target:  5'- gCGCgGCCGggagagCGGgGGGGAGcgCCGGc -3'
miRNA:   3'- aGUG-CGGCa-----GCCgCCCUUCuaGGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.