miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 3' -57.5 NC_006560.1 + 89306 0.66 0.847344
Target:  5'- ---gGCCGUuccCGGCGGGAccucAGAcggCCGGGg -3'
miRNA:   3'- agugCGGCA---GCCGCCCU----UCUa--GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 99827 0.66 0.847344
Target:  5'- gCugGuuGUagugGGCGGccgGGAUCCAGAg -3'
miRNA:   3'- aGugCggCAg---CCGCCcu-UCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 117550 0.66 0.847344
Target:  5'- aCACGCCcugaCGGCGGGcGGcgCCGc- -3'
miRNA:   3'- aGUGCGGca--GCCGCCCuUCuaGGUcu -5'
30996 3' -57.5 NC_006560.1 + 128177 0.66 0.847344
Target:  5'- uUCACGUgGUCGuCGGGGAGuacgCCAc- -3'
miRNA:   3'- -AGUGCGgCAGCcGCCCUUCua--GGUcu -5'
30996 3' -57.5 NC_006560.1 + 95037 0.66 0.847344
Target:  5'- -gGCGCCG-CGGcCGGGGAG--CCGGc -3'
miRNA:   3'- agUGCGGCaGCC-GCCCUUCuaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 124139 0.66 0.847344
Target:  5'- gUCGCGgCGcCGGCGgGGGAGG-CCGa- -3'
miRNA:   3'- -AGUGCgGCaGCCGC-CCUUCUaGGUcu -5'
30996 3' -57.5 NC_006560.1 + 15047 0.66 0.846558
Target:  5'- cUCGCGCCGgggggcgacggcgUCGGUGGGggG--CgGGGg -3'
miRNA:   3'- -AGUGCGGC-------------AGCCGCCCuuCuaGgUCU- -5'
30996 3' -57.5 NC_006560.1 + 130458 0.66 0.839401
Target:  5'- cCGCGCgCGUCGGCcGGGAcccccgcaCCGGGc -3'
miRNA:   3'- aGUGCG-GCAGCCG-CCCUucua----GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 34655 0.66 0.839401
Target:  5'- aCGCGCgG-CGGcCGGGcGGGUCgCGGGg -3'
miRNA:   3'- aGUGCGgCaGCC-GCCCuUCUAG-GUCU- -5'
30996 3' -57.5 NC_006560.1 + 45749 0.66 0.839401
Target:  5'- cUCGCGCCcccgccagggGUUGGCGuGGggGggCgCGGGc -3'
miRNA:   3'- -AGUGCGG----------CAGCCGC-CCuuCuaG-GUCU- -5'
30996 3' -57.5 NC_006560.1 + 99711 0.67 0.831275
Target:  5'- aCACGCCGcCcgGGUGGGggGGcgcguacgccgCCGGGg -3'
miRNA:   3'- aGUGCGGCaG--CCGCCCuuCUa----------GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 34577 0.67 0.822975
Target:  5'- gCGCGaCGgggagagacCGGCGGGggGGggcUCCGGGg -3'
miRNA:   3'- aGUGCgGCa--------GCCGCCCuuCU---AGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 124677 0.67 0.822975
Target:  5'- uUC-CGUCGUCGGCGGuGAu-GUUCGGGc -3'
miRNA:   3'- -AGuGCGGCAGCCGCC-CUucUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 13988 0.67 0.817913
Target:  5'- uUCACGUCGUCGGuCGGuuuauuguucgauccGAGGGcCCGGc -3'
miRNA:   3'- -AGUGCGGCAGCC-GCC---------------CUUCUaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 12697 0.67 0.814506
Target:  5'- -gGCGCCcgugugGUCGGCGGGGguGGGggCGGGg -3'
miRNA:   3'- agUGCGG------CAGCCGCCCU--UCUagGUCU- -5'
30996 3' -57.5 NC_006560.1 + 114849 0.67 0.805878
Target:  5'- -gGCGCUGUa-GCGGGGAGGggCGGAg -3'
miRNA:   3'- agUGCGGCAgcCGCCCUUCUagGUCU- -5'
30996 3' -57.5 NC_006560.1 + 112561 0.67 0.805878
Target:  5'- gUCGcCGCCGUCcGCGGGgcGuUCgAGGa -3'
miRNA:   3'- -AGU-GCGGCAGcCGCCCuuCuAGgUCU- -5'
30996 3' -57.5 NC_006560.1 + 93848 0.67 0.805878
Target:  5'- uUCGCGCCGUgCGGCGGcGccugcgcCCGGGg -3'
miRNA:   3'- -AGUGCGGCA-GCCGCC-Cuucua--GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 50794 0.67 0.805878
Target:  5'- -gACGCCGUCGuGCGGGu-GG-CCGcGAa -3'
miRNA:   3'- agUGCGGCAGC-CGCCCuuCUaGGU-CU- -5'
30996 3' -57.5 NC_006560.1 + 73172 0.67 0.805878
Target:  5'- gCACGCCGgcgCGGgGGcGGAGggCCcGGc -3'
miRNA:   3'- aGUGCGGCa--GCCgCC-CUUCuaGGuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.