miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 3' -57.5 NC_006560.1 + 129445 0.66 0.870016
Target:  5'- -uGCGCUGggacUCGGCGGcGggGggCuCGGAg -3'
miRNA:   3'- agUGCGGC----AGCCGCC-CuuCuaG-GUCU- -5'
30996 3' -57.5 NC_006560.1 + 90343 0.66 0.870016
Target:  5'- -gACGCCGUCGcGCGGGcGGccgcCCAc- -3'
miRNA:   3'- agUGCGGCAGC-CGCCCuUCua--GGUcu -5'
30996 3' -57.5 NC_006560.1 + 32841 0.66 0.870016
Target:  5'- cCACGCgGgCGGCGGGcAGccccCCGGGc -3'
miRNA:   3'- aGUGCGgCaGCCGCCCuUCua--GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 46026 0.66 0.86929
Target:  5'- cCGCGCagaagucCGUCGGCaucgccacccGGAGAUCCAGGg -3'
miRNA:   3'- aGUGCG-------GCAGCCGcc--------CUUCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 11929 0.66 0.862658
Target:  5'- gCGgGCCcgcaggagggGcCGGCGGGccAGGUCCAGGg -3'
miRNA:   3'- aGUgCGG----------CaGCCGCCCu-UCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 72232 0.66 0.862658
Target:  5'- aCGcCGCCgGUCGGCGaGGggGG--CGGAg -3'
miRNA:   3'- aGU-GCGG-CAGCCGC-CCuuCUagGUCU- -5'
30996 3' -57.5 NC_006560.1 + 11244 0.66 0.862658
Target:  5'- -gGCGCCGcUUGGCccgacGGGgcGAcUCCGGGg -3'
miRNA:   3'- agUGCGGC-AGCCG-----CCCuuCU-AGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 146015 0.66 0.862658
Target:  5'- -gAgGCCGUgGGCGGGGucucCCGGGu -3'
miRNA:   3'- agUgCGGCAgCCGCCCUucuaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 142091 0.66 0.862658
Target:  5'- -gGgGCCG-CGGCGcGGAGGAUucCCGGc -3'
miRNA:   3'- agUgCGGCaGCCGC-CCUUCUA--GGUCu -5'
30996 3' -57.5 NC_006560.1 + 20976 0.66 0.86929
Target:  5'- -gGCGCCGcCGGCuuuaugucggcggGGGAAGggCgGGGc -3'
miRNA:   3'- agUGCGGCaGCCG-------------CCCUUCuaGgUCU- -5'
30996 3' -57.5 NC_006560.1 + 73172 0.67 0.805878
Target:  5'- gCACGCCGgcgCGGgGGcGGAGggCCcGGc -3'
miRNA:   3'- aGUGCGGCa--GCCgCC-CUUCuaGGuCU- -5'
30996 3' -57.5 NC_006560.1 + 50794 0.67 0.805878
Target:  5'- -gACGCCGUCGuGCGGGu-GG-CCGcGAa -3'
miRNA:   3'- agUGCGGCAGC-CGCCCuuCUaGGU-CU- -5'
30996 3' -57.5 NC_006560.1 + 93848 0.67 0.805878
Target:  5'- uUCGCGCCGUgCGGCGGcGccugcgcCCGGGg -3'
miRNA:   3'- -AGUGCGGCA-GCCGCC-Cuucua--GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 112561 0.67 0.805878
Target:  5'- gUCGcCGCCGUCcGCGGGgcGuUCgAGGa -3'
miRNA:   3'- -AGU-GCGGCAGcCGCCCuuCuAGgUCU- -5'
30996 3' -57.5 NC_006560.1 + 114849 0.67 0.805878
Target:  5'- -gGCGCUGUa-GCGGGGAGGggCGGAg -3'
miRNA:   3'- agUGCGGCAgcCGCCCUUCUagGUCU- -5'
30996 3' -57.5 NC_006560.1 + 12697 0.67 0.814506
Target:  5'- -gGCGCCcgugugGUCGGCGGGGguGGGggCGGGg -3'
miRNA:   3'- agUGCGG------CAGCCGCCCU--UCUagGUCU- -5'
30996 3' -57.5 NC_006560.1 + 13988 0.67 0.817913
Target:  5'- uUCACGUCGUCGGuCGGuuuauuguucgauccGAGGGcCCGGc -3'
miRNA:   3'- -AGUGCGGCAGCC-GCC---------------CUUCUaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 34577 0.67 0.822975
Target:  5'- gCGCGaCGgggagagacCGGCGGGggGGggcUCCGGGg -3'
miRNA:   3'- aGUGCgGCa--------GCCGCCCuuCU---AGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 124677 0.67 0.822975
Target:  5'- uUC-CGUCGUCGGCGGuGAu-GUUCGGGc -3'
miRNA:   3'- -AGuGCGGCAGCCGCC-CUucUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 3768 0.67 0.805006
Target:  5'- -gGCGCCGcgCGGCGGGAccgcggcgcgcgcGGccgCCAGc -3'
miRNA:   3'- agUGCGGCa-GCCGCCCU-------------UCua-GGUCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.