miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 3' -57.5 NC_006560.1 + 15241 0.68 0.760616
Target:  5'- cCGCgGCCGgugCGGuCGGGGAGGcggacgCCGGGg -3'
miRNA:   3'- aGUG-CGGCa--GCC-GCCCUUCUa-----GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 15742 0.66 0.877168
Target:  5'- gCACGCCGggGGCgcgcgcguccgGGGgcGAcUCCGGGc -3'
miRNA:   3'- aGUGCGGCagCCG-----------CCCuuCU-AGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 17683 0.72 0.513945
Target:  5'- -gGCGCCGUgGGgccCGGGggGGUCguGGg -3'
miRNA:   3'- agUGCGGCAgCC---GCCCuuCUAGguCU- -5'
30996 3' -57.5 NC_006560.1 + 18886 0.68 0.741681
Target:  5'- gCcCGCCGUgGGCGGcGGAGAcagagccgcaUCCGGc -3'
miRNA:   3'- aGuGCGGCAgCCGCC-CUUCU----------AGGUCu -5'
30996 3' -57.5 NC_006560.1 + 20976 0.66 0.86929
Target:  5'- -gGCGCCGcCGGCuuuaugucggcggGGGAAGggCgGGGc -3'
miRNA:   3'- agUGCGGCaGCCG-------------CCCUUCuaGgUCU- -5'
30996 3' -57.5 NC_006560.1 + 26617 0.71 0.572642
Target:  5'- cCGCGCCG-CGGgGGGggGGgaCGGGg -3'
miRNA:   3'- aGUGCGGCaGCCgCCCuuCUagGUCU- -5'
30996 3' -57.5 NC_006560.1 + 26776 0.68 0.741681
Target:  5'- cCGCGugcCCG-CGGCGcGGAGGAgCCGGGg -3'
miRNA:   3'- aGUGC---GGCaGCCGC-CCUUCUaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 27371 0.66 0.847344
Target:  5'- cCcCGCCGggaaacgCGGCGcGGggGG-CCGGGc -3'
miRNA:   3'- aGuGCGGCa------GCCGC-CCuuCUaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 27678 0.67 0.797097
Target:  5'- cUCGCccGCCGUCGGuCGGGguGcgCCGc- -3'
miRNA:   3'- -AGUG--CGGCAGCC-GCCCuuCuaGGUcu -5'
30996 3' -57.5 NC_006560.1 + 28341 0.68 0.779111
Target:  5'- -gGCGCCGcccggcuccuccccgCGGCGGGGAGGagccgccgccgucUCCGGc -3'
miRNA:   3'- agUGCGGCa--------------GCCGCCCUUCU-------------AGGUCu -5'
30996 3' -57.5 NC_006560.1 + 28569 0.7 0.662937
Target:  5'- cCGCGCCG-CGGCGGaGccaauGGUCCuGAa -3'
miRNA:   3'- aGUGCGGCaGCCGCC-Cuu---CUAGGuCU- -5'
30996 3' -57.5 NC_006560.1 + 30245 0.74 0.413712
Target:  5'- cCACGCCGgugggUGGCGGGAGGccgCgGGAg -3'
miRNA:   3'- aGUGCGGCa----GCCGCCCUUCua-GgUCU- -5'
30996 3' -57.5 NC_006560.1 + 32173 0.7 0.642842
Target:  5'- -gGCGCCGagGGCGGGucGAggcccgcCCGGGa -3'
miRNA:   3'- agUGCGGCagCCGCCCuuCUa------GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 32841 0.66 0.870016
Target:  5'- cCACGCgGgCGGCGGGcAGccccCCGGGc -3'
miRNA:   3'- aGUGCGgCaGCCGCCCuUCua--GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 32946 0.68 0.779111
Target:  5'- gUCGcCGCCGgCGGCgacGGGAAGG-CCGGc -3'
miRNA:   3'- -AGU-GCGGCaGCCG---CCCUUCUaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 34146 0.71 0.612659
Target:  5'- gUCGCGCUGUCuGGagGGGAgGGGUCCGcGAg -3'
miRNA:   3'- -AGUGCGGCAG-CCg-CCCU-UCUAGGU-CU- -5'
30996 3' -57.5 NC_006560.1 + 34577 0.67 0.822975
Target:  5'- gCGCGaCGgggagagacCGGCGGGggGGggcUCCGGGg -3'
miRNA:   3'- aGUGCgGCa--------GCCGCCCuuCU---AGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 34655 0.66 0.839401
Target:  5'- aCGCGCgG-CGGcCGGGcGGGUCgCGGGg -3'
miRNA:   3'- aGUGCGgCaGCC-GCCCuUCUAG-GUCU- -5'
30996 3' -57.5 NC_006560.1 + 35276 0.85 0.100831
Target:  5'- cCGCGCCGggCGGCGGGGcccgGGGUCCGGGg -3'
miRNA:   3'- aGUGCGGCa-GCCGCCCU----UCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 39618 0.72 0.533272
Target:  5'- -aGCGCCG-CGGCGGGcgucGGcGUCCGGGc -3'
miRNA:   3'- agUGCGGCaGCCGCCCu---UC-UAGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.