miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 3' -57.5 NC_006560.1 + 3 0.73 0.504389
Target:  5'- cCGCGCCGcguuuccCGGCGGGgcGGUUCGGc -3'
miRNA:   3'- aGUGCGGCa------GCCGCCCuuCUAGGUCu -5'
30996 3' -57.5 NC_006560.1 + 210 0.71 0.602616
Target:  5'- gCGCGCCG-CcGCGGGAGGGcCCGGc -3'
miRNA:   3'- aGUGCGGCaGcCGCCCUUCUaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 1632 0.66 0.855099
Target:  5'- uUCGCGCCuGUCuguGGCGGGG----CCGGGg -3'
miRNA:   3'- -AGUGCGG-CAG---CCGCCCUucuaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 2064 0.76 0.341248
Target:  5'- gCACGCgCGgcgCGGCGGcGGGGUCCGGGg -3'
miRNA:   3'- aGUGCG-GCa--GCCGCCcUUCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 2796 0.68 0.741681
Target:  5'- gCGCGCCcagcgccgagacGUCGGgGGGcccGGUCCAGu -3'
miRNA:   3'- aGUGCGG------------CAGCCgCCCuu-CUAGGUCu -5'
30996 3' -57.5 NC_006560.1 + 3768 0.67 0.805006
Target:  5'- -gGCGCCGcgCGGCGGGAccgcggcgcgcgcGGccgCCAGc -3'
miRNA:   3'- agUGCGGCa-GCCGCCCU-------------UCua-GGUCu -5'
30996 3' -57.5 NC_006560.1 + 3942 0.72 0.562723
Target:  5'- -gGCGCCGcggUCGGCGGcGAGGGcggccgCCAGGc -3'
miRNA:   3'- agUGCGGC---AGCCGCC-CUUCUa-----GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 4760 0.69 0.682934
Target:  5'- cCGCGgCGgCGGCGGcGcGGGGUCCGGGu -3'
miRNA:   3'- aGUGCgGCaGCCGCC-C-UUCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 4886 0.71 0.5966
Target:  5'- -gGCGgCGcCGGCGGGGgccgcgucgcgcucgGGGUCCGGGu -3'
miRNA:   3'- agUGCgGCaGCCGCCCU---------------UCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 5345 0.68 0.769923
Target:  5'- -gGCGUCcUCGGCGGGccGucGUCCGGGu -3'
miRNA:   3'- agUGCGGcAGCCGCCCuuC--UAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 9286 0.66 0.855099
Target:  5'- gCGCGCC-UCGG-GGGAccacGGGUCCGc- -3'
miRNA:   3'- aGUGCGGcAGCCgCCCU----UCUAGGUcu -5'
30996 3' -57.5 NC_006560.1 + 10854 0.68 0.760616
Target:  5'- aCGCGCgCGUCGcuagcgaccggaGCGGGGAacGAUCCAc- -3'
miRNA:   3'- aGUGCG-GCAGC------------CGCCCUU--CUAGGUcu -5'
30996 3' -57.5 NC_006560.1 + 11244 0.66 0.862658
Target:  5'- -gGCGCCGcUUGGCccgacGGGgcGAcUCCGGGg -3'
miRNA:   3'- agUGCGGC-AGCCG-----CCCuuCU-AGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 11929 0.66 0.862658
Target:  5'- gCGgGCCcgcaggagggGcCGGCGGGccAGGUCCAGGg -3'
miRNA:   3'- aGUgCGG----------CaGCCGCCCu-UCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 12697 0.67 0.814506
Target:  5'- -gGCGCCcgugugGUCGGCGGGGguGGGggCGGGg -3'
miRNA:   3'- agUGCGG------CAGCCGCCCU--UCUagGUCU- -5'
30996 3' -57.5 NC_006560.1 + 13041 0.68 0.760616
Target:  5'- gCAgGCCGUCGGgGGGAuGcgCagCGGAa -3'
miRNA:   3'- aGUgCGGCAGCCgCCCUuCuaG--GUCU- -5'
30996 3' -57.5 NC_006560.1 + 13988 0.67 0.817913
Target:  5'- uUCACGUCGUCGGuCGGuuuauuguucgauccGAGGGcCCGGc -3'
miRNA:   3'- -AGUGCGGCAGCC-GCC---------------CUUCUaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 14792 0.69 0.692877
Target:  5'- gCACGggcuCCGUCGGgGGGcucGGGggCCGGAg -3'
miRNA:   3'- aGUGC----GGCAGCCgCCC---UUCuaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 14867 0.71 0.572642
Target:  5'- -gGCGCCGggggGGCGGGGAGAggucguucCCGGGc -3'
miRNA:   3'- agUGCGGCag--CCGCCCUUCUa-------GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 15047 0.66 0.846558
Target:  5'- cUCGCGCCGgggggcgacggcgUCGGUGGGggG--CgGGGg -3'
miRNA:   3'- -AGUGCGGC-------------AGCCGCCCuuCuaGgUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.