miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 3' -57.5 NC_006560.1 + 150539 0.71 0.602616
Target:  5'- gCGCGCCG-CcGCGGGAGGGcCCGGc -3'
miRNA:   3'- aGUGCGGCaGcCGCCCUUCUaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 150332 0.73 0.504389
Target:  5'- cCGCGCCGcguuuccCGGCGGGgcGGUUCGGc -3'
miRNA:   3'- aGUGCGGCa------GCCGCCCuuCUAGGUCu -5'
30996 3' -57.5 NC_006560.1 + 150304 0.71 0.602616
Target:  5'- gCGCGCCG-CcGCGGGAGGGcCCGGc -3'
miRNA:   3'- aGUGCGGCaGcCGCCCUUCUaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 147359 0.66 0.877168
Target:  5'- -gACGCCGgucagUCGGgGuGGggGGUgCGGGg -3'
miRNA:   3'- agUGCGGC-----AGCCgC-CCuuCUAgGUCU- -5'
30996 3' -57.5 NC_006560.1 + 147043 0.69 0.682934
Target:  5'- -gACgGCCGgggggCGGCGGGggGAggCGGGc -3'
miRNA:   3'- agUG-CGGCa----GCCGCCCuuCUagGUCU- -5'
30996 3' -57.5 NC_006560.1 + 146015 0.66 0.862658
Target:  5'- -gAgGCCGUgGGCGGGGucucCCGGGu -3'
miRNA:   3'- agUgCGGCAgCCGCCCUucuaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 145908 0.72 0.552852
Target:  5'- --uCGCCcUCGGCGGG--GGUCCAGGg -3'
miRNA:   3'- aguGCGGcAGCCGCCCuuCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 142091 0.66 0.862658
Target:  5'- -gGgGCCG-CGGCGcGGAGGAUucCCGGc -3'
miRNA:   3'- agUgCGGCaGCCGC-CCUUCUA--GGUCu -5'
30996 3' -57.5 NC_006560.1 + 140925 1.09 0.002368
Target:  5'- gUCACGCCGUCGGCGGGAAGAUCCAGAc -3'
miRNA:   3'- -AGUGCGGCAGCCGCCCUUCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 140362 0.68 0.741681
Target:  5'- -gGCGUCGgcgCGGCGcGGcccGAGGUCCGGu -3'
miRNA:   3'- agUGCGGCa--GCCGC-CC---UUCUAGGUCu -5'
30996 3' -57.5 NC_006560.1 + 139273 0.73 0.49491
Target:  5'- gCGCGCgguCGUCGGCGcGGggGGgcaCCGGGu -3'
miRNA:   3'- aGUGCG---GCAGCCGC-CCuuCUa--GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 137041 0.75 0.388519
Target:  5'- gUCGCGCCucaucuUCGGCGGGcuGAUCCAc- -3'
miRNA:   3'- -AGUGCGGc-----AGCCGCCCuuCUAGGUcu -5'
30996 3' -57.5 NC_006560.1 + 132740 0.71 0.592595
Target:  5'- -aGgGCCGUCaggaucgggGGCGGGuuguGAUCCAGGa -3'
miRNA:   3'- agUgCGGCAG---------CCGCCCuu--CUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 132046 0.69 0.701783
Target:  5'- cCGCGCUGcgCGGCGGGGcgcugcuGGAcUCGGAg -3'
miRNA:   3'- aGUGCGGCa-GCCGCCCU-------UCUaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 130458 0.66 0.839401
Target:  5'- cCGCGCgCGUCGGCcGGGAcccccgcaCCGGGc -3'
miRNA:   3'- aGUGCG-GCAGCCG-CCCUucua----GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 129445 0.66 0.870016
Target:  5'- -uGCGCUGggacUCGGCGGcGggGggCuCGGAg -3'
miRNA:   3'- agUGCGGC----AGCCGCC-CuuCuaG-GUCU- -5'
30996 3' -57.5 NC_006560.1 + 129327 0.7 0.649882
Target:  5'- -gGCGUCGUcccgaccgugggccCGGCGGGGgAGAUCgAGAu -3'
miRNA:   3'- agUGCGGCA--------------GCCGCCCU-UCUAGgUCU- -5'
30996 3' -57.5 NC_006560.1 + 128274 0.75 0.364353
Target:  5'- gCGCGCCGagGGgGGGGAGGgccCCGGGg -3'
miRNA:   3'- aGUGCGGCagCCgCCCUUCUa--GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 128177 0.66 0.847344
Target:  5'- uUCACGUgGUCGuCGGGGAGuacgCCAc- -3'
miRNA:   3'- -AGUGCGgCAGCcGCCCUUCua--GGUcu -5'
30996 3' -57.5 NC_006560.1 + 127329 0.69 0.722375
Target:  5'- cCGUGUCGUUGGCGGGGccauaAGAggCCGGGg -3'
miRNA:   3'- aGUGCGGCAGCCGCCCU-----UCUa-GGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.