miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 3' -57.5 NC_006560.1 + 140925 1.09 0.002368
Target:  5'- gUCACGCCGUCGGCGGGAAGAUCCAGAc -3'
miRNA:   3'- -AGUGCGGCAGCCGCCCUUCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 35276 0.85 0.100831
Target:  5'- cCGCGCCGggCGGCGGGGcccgGGGUCCGGGg -3'
miRNA:   3'- aGUGCGGCa-GCCGCCCU----UCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 2064 0.76 0.341248
Target:  5'- gCACGCgCGgcgCGGCGGcGGGGUCCGGGg -3'
miRNA:   3'- aGUGCG-GCa--GCCGCCcUUCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 128274 0.75 0.364353
Target:  5'- gCGCGCCGagGGgGGGGAGGgccCCGGGg -3'
miRNA:   3'- aGUGCGGCagCCgCCCUUCUa--GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 137041 0.75 0.388519
Target:  5'- gUCGCGCCucaucuUCGGCGGGcuGAUCCAc- -3'
miRNA:   3'- -AGUGCGGc-----AGCCGCCCuuCUAGGUcu -5'
30996 3' -57.5 NC_006560.1 + 30245 0.74 0.413712
Target:  5'- cCACGCCGgugggUGGCGGGAGGccgCgGGAg -3'
miRNA:   3'- aGUGCGGCa----GCCGCCCUUCua-GgUCU- -5'
30996 3' -57.5 NC_006560.1 + 45209 0.73 0.457852
Target:  5'- -gGCGUCGaacUCGGCGGuGAAGA-CCAGAc -3'
miRNA:   3'- agUGCGGC---AGCCGCC-CUUCUaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 70823 0.73 0.466981
Target:  5'- gCGCGCCG-CGGCGGuccgGGAGGUCCucgcGGAc -3'
miRNA:   3'- aGUGCGGCaGCCGCC----CUUCUAGG----UCU- -5'
30996 3' -57.5 NC_006560.1 + 46509 0.73 0.485513
Target:  5'- gUguCGUCGUCGGCGGGcGGAggCGGAa -3'
miRNA:   3'- -AguGCGGCAGCCGCCCuUCUagGUCU- -5'
30996 3' -57.5 NC_006560.1 + 139273 0.73 0.49491
Target:  5'- gCGCGCgguCGUCGGCGcGGggGGgcaCCGGGu -3'
miRNA:   3'- aGUGCG---GCAGCCGC-CCuuCUa--GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 150332 0.73 0.504389
Target:  5'- cCGCGCCGcguuuccCGGCGGGgcGGUUCGGc -3'
miRNA:   3'- aGUGCGGCa------GCCGCCCuuCUAGGUCu -5'
30996 3' -57.5 NC_006560.1 + 3 0.73 0.504389
Target:  5'- cCGCGCCGcguuuccCGGCGGGgcGGUUCGGc -3'
miRNA:   3'- aGUGCGGCa------GCCGCCCuuCUAGGUCu -5'
30996 3' -57.5 NC_006560.1 + 17683 0.72 0.513945
Target:  5'- -gGCGCCGUgGGgccCGGGggGGUCguGGg -3'
miRNA:   3'- agUGCGGCAgCC---GCCCuuCUAGguCU- -5'
30996 3' -57.5 NC_006560.1 + 39618 0.72 0.533272
Target:  5'- -aGCGCCG-CGGCGGGcgucGGcGUCCGGGc -3'
miRNA:   3'- agUGCGGCaGCCGCCCu---UC-UAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 107878 0.72 0.552852
Target:  5'- gUCACGcCCGUCaGGCGGGc-GAcCCGGGu -3'
miRNA:   3'- -AGUGC-GGCAG-CCGCCCuuCUaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 145908 0.72 0.552852
Target:  5'- --uCGCCcUCGGCGGG--GGUCCAGGg -3'
miRNA:   3'- aguGCGGcAGCCGCCCuuCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 57757 0.72 0.552852
Target:  5'- gCGCGCgCGUCGGCGGGcAGcaccaCGGAg -3'
miRNA:   3'- aGUGCG-GCAGCCGCCCuUCuag--GUCU- -5'
30996 3' -57.5 NC_006560.1 + 3942 0.72 0.562723
Target:  5'- -gGCGCCGcggUCGGCGGcGAGGGcggccgCCAGGc -3'
miRNA:   3'- agUGCGGC---AGCCGCC-CUUCUa-----GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 14867 0.71 0.572642
Target:  5'- -gGCGCCGggggGGCGGGGAGAggucguucCCGGGc -3'
miRNA:   3'- agUGCGGCag--CCGCCCUUCUa-------GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 26617 0.71 0.572642
Target:  5'- cCGCGCCG-CGGgGGGggGGgaCGGGg -3'
miRNA:   3'- aGUGCGGCaGCCgCCCuuCUagGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.