miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 3' -57.5 NC_006560.1 + 108421 0.71 0.582601
Target:  5'- gUCAgguaGCCGUCGGCGGG-AGAcgCCGc- -3'
miRNA:   3'- -AGUg---CGGCAGCCGCCCuUCUa-GGUcu -5'
30996 3' -57.5 NC_006560.1 + 132740 0.71 0.592595
Target:  5'- -aGgGCCGUCaggaucgggGGCGGGuuguGAUCCAGGa -3'
miRNA:   3'- agUgCGGCAG---------CCGCCCuu--CUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 4886 0.71 0.5966
Target:  5'- -gGCGgCGcCGGCGGGGgccgcgucgcgcucgGGGUCCGGGu -3'
miRNA:   3'- agUGCgGCaGCCGCCCU---------------UCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 150539 0.71 0.602616
Target:  5'- gCGCGCCG-CcGCGGGAGGGcCCGGc -3'
miRNA:   3'- aGUGCGGCaGcCGCCCUUCUaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 150304 0.71 0.602616
Target:  5'- gCGCGCCG-CcGCGGGAGGGcCCGGc -3'
miRNA:   3'- aGUGCGGCaGcCGCCCUUCUaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 210 0.71 0.602616
Target:  5'- gCGCGCCG-CcGCGGGAGGGcCCGGc -3'
miRNA:   3'- aGUGCGGCaGcCGCCCUUCUaGGUCu -5'
30996 3' -57.5 NC_006560.1 + 54853 0.71 0.602616
Target:  5'- cCACGCCGcCGcCGGGAGGcgCCcgGGAg -3'
miRNA:   3'- aGUGCGGCaGCcGCCCUUCuaGG--UCU- -5'
30996 3' -57.5 NC_006560.1 + 34146 0.71 0.612659
Target:  5'- gUCGCGCUGUCuGGagGGGAgGGGUCCGcGAg -3'
miRNA:   3'- -AGUGCGGCAG-CCg-CCCU-UCUAGGU-CU- -5'
30996 3' -57.5 NC_006560.1 + 54956 0.7 0.622715
Target:  5'- gCGCGCCGgCGGCGgGGGAGGcgaCGGGc -3'
miRNA:   3'- aGUGCGGCaGCCGC-CCUUCUag-GUCU- -5'
30996 3' -57.5 NC_006560.1 + 32173 0.7 0.642842
Target:  5'- -gGCGCCGagGGCGGGucGAggcccgcCCGGGa -3'
miRNA:   3'- agUGCGGCagCCGCCCuuCUa------GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 47643 0.7 0.642842
Target:  5'- ---gGCCGUUcGCGGGAGGA-CCGGGg -3'
miRNA:   3'- agugCGGCAGcCGCCCUUCUaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 129327 0.7 0.649882
Target:  5'- -gGCGUCGUcccgaccgugggccCGGCGGGGgAGAUCgAGAu -3'
miRNA:   3'- agUGCGGCA--------------GCCGCCCU-UCUAGgUCU- -5'
30996 3' -57.5 NC_006560.1 + 80858 0.7 0.652897
Target:  5'- gCGCGCgGgcugggCGGCGGGGGcGG-CCAGAa -3'
miRNA:   3'- aGUGCGgCa-----GCCGCCCUU-CUaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 46205 0.7 0.662937
Target:  5'- gUCGCGCCGUUGGgGGcGAucaGGAUcaCCGGc -3'
miRNA:   3'- -AGUGCGGCAGCCgCC-CU---UCUA--GGUCu -5'
30996 3' -57.5 NC_006560.1 + 51779 0.7 0.662937
Target:  5'- cUCGCGCCcccCGGCGGcGGGcgCCGGGa -3'
miRNA:   3'- -AGUGCGGca-GCCGCCcUUCuaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 28569 0.7 0.662937
Target:  5'- cCGCGCCG-CGGCGGaGccaauGGUCCuGAa -3'
miRNA:   3'- aGUGCGGCaGCCGCC-Cuu---CUAGGuCU- -5'
30996 3' -57.5 NC_006560.1 + 147043 0.69 0.682934
Target:  5'- -gACgGCCGgggggCGGCGGGggGAggCGGGc -3'
miRNA:   3'- agUG-CGGCa----GCCGCCCuuCUagGUCU- -5'
30996 3' -57.5 NC_006560.1 + 4760 0.69 0.682934
Target:  5'- cCGCGgCGgCGGCGGcGcGGGGUCCGGGu -3'
miRNA:   3'- aGUGCgGCaGCCGCC-C-UUCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 14792 0.69 0.692877
Target:  5'- gCACGggcuCCGUCGGgGGGcucGGGggCCGGAg -3'
miRNA:   3'- aGUGC----GGCAGCCgCCC---UUCuaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 132046 0.69 0.701783
Target:  5'- cCGCGCUGcgCGGCGGGGcgcugcuGGAcUCGGAg -3'
miRNA:   3'- aGUGCGGCa-GCCGCCCU-------UCUaGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.