miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 5' -51.4 NC_006560.1 + 140959 1.09 0.009119
Target:  5'- cCUUCAAAACGUCCGCCACGGUUCGCGc -3'
miRNA:   3'- -GAAGUUUUGCAGGCGGUGCCAAGCGC- -5'
30996 5' -51.4 NC_006560.1 + 74944 0.73 0.836805
Target:  5'- -gUCGAGGCGgCCGCC-CGGgccCGCGa -3'
miRNA:   3'- gaAGUUUUGCaGGCGGuGCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 149126 0.72 0.853227
Target:  5'- aUUCAGGACcauuggcUCCGCCGCGG--CGCGg -3'
miRNA:   3'- gAAGUUUUGc------AGGCGGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 30559 0.72 0.861128
Target:  5'- --cCGAGGCGg-CGCCGCGGcgCGCGc -3'
miRNA:   3'- gaaGUUUUGCagGCGGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 51361 0.71 0.903805
Target:  5'- cCUUCGGGACGgaggccggCCGCCGCGcGcUCgGCGa -3'
miRNA:   3'- -GAAGUUUUGCa-------GGCGGUGC-CaAG-CGC- -5'
30996 5' -51.4 NC_006560.1 + 131167 0.71 0.910085
Target:  5'- -cUCuGGGCGgcggCCGCCGCGGgggCGCc -3'
miRNA:   3'- gaAGuUUUGCa---GGCGGUGCCaa-GCGc -5'
30996 5' -51.4 NC_006560.1 + 91126 0.71 0.916119
Target:  5'- ------uGCGgggCCGCCAccccCGGUUCGCGa -3'
miRNA:   3'- gaaguuuUGCa--GGCGGU----GCCAAGCGC- -5'
30996 5' -51.4 NC_006560.1 + 44806 0.71 0.916119
Target:  5'- --gCGAgacGACGUCCGCCGCGcGgcaggucugCGCGg -3'
miRNA:   3'- gaaGUU---UUGCAGGCGGUGC-Caa-------GCGC- -5'
30996 5' -51.4 NC_006560.1 + 58893 0.7 0.921905
Target:  5'- gCUUCAuGAGCGUCgCGgCGCGGagcuccgUCGCGc -3'
miRNA:   3'- -GAAGU-UUUGCAG-GCgGUGCCa------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 3568 0.7 0.932727
Target:  5'- --aCGGAGCGcacCUGCCGCGGgcUGCGg -3'
miRNA:   3'- gaaGUUUUGCa--GGCGGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 52737 0.7 0.942554
Target:  5'- --cCAGGuACG-CCGCCGCGGUggugggccugCGCGa -3'
miRNA:   3'- gaaGUUU-UGCaGGCGGUGCCAa---------GCGC- -5'
30996 5' -51.4 NC_006560.1 + 60206 0.69 0.947097
Target:  5'- cCUUCuccaacauGCG-CCGCCGCGGUcacUCgGCGg -3'
miRNA:   3'- -GAAGuuu-----UGCaGGCGGUGCCA---AG-CGC- -5'
30996 5' -51.4 NC_006560.1 + 117673 0.69 0.955455
Target:  5'- gUUCGccGCGUacaUGCCGCGGgaCGCGc -3'
miRNA:   3'- gAAGUuuUGCAg--GCGGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 27650 0.69 0.955455
Target:  5'- --gCGGGGCGcggCCGCCGCGGaggUCGUc -3'
miRNA:   3'- gaaGUUUUGCa--GGCGGUGCCa--AGCGc -5'
30996 5' -51.4 NC_006560.1 + 109510 0.69 0.959277
Target:  5'- -----uGGCGUCgUGCCACGGgggacUCGCGa -3'
miRNA:   3'- gaaguuUUGCAG-GCGGUGCCa----AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 23318 0.69 0.962868
Target:  5'- ---gAGAACG-CCGCCGCGGccggCGCc -3'
miRNA:   3'- gaagUUUUGCaGGCGGUGCCaa--GCGc -5'
30996 5' -51.4 NC_006560.1 + 134975 0.68 0.966232
Target:  5'- aCUgcgCGAAGCaGUCCGCCA-GGccgCGCGc -3'
miRNA:   3'- -GAa--GUUUUG-CAGGCGGUgCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 25066 0.68 0.966232
Target:  5'- --gCGAGGCGgCCGCCGcCGGcgCGCc -3'
miRNA:   3'- gaaGUUUUGCaGGCGGU-GCCaaGCGc -5'
30996 5' -51.4 NC_006560.1 + 133476 0.68 0.969375
Target:  5'- --cCGGGGCGUCCGgcguCUACGGgcgagCGCGa -3'
miRNA:   3'- gaaGUUUUGCAGGC----GGUGCCaa---GCGC- -5'
30996 5' -51.4 NC_006560.1 + 48647 0.68 0.969375
Target:  5'- -cUCcgcGCGUCCGUCGCGGa--GCGg -3'
miRNA:   3'- gaAGuuuUGCAGGCGGUGCCaagCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.