miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 5' -51.4 NC_006560.1 + 3568 0.7 0.932727
Target:  5'- --aCGGAGCGcacCUGCCGCGGgcUGCGg -3'
miRNA:   3'- gaaGUUUUGCa--GGCGGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 4628 0.68 0.975025
Target:  5'- -cUCGucGGCGUCCaggggcacggGCCGCGGccgCGCGg -3'
miRNA:   3'- gaAGUu-UUGCAGG----------CGGUGCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 11564 0.68 0.974762
Target:  5'- uCUUCGGucuccccGACcUCCGCCGCcucGGgggUCGCGg -3'
miRNA:   3'- -GAAGUU-------UUGcAGGCGGUG---CCa--AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 15435 0.66 0.992577
Target:  5'- --gCGGcGCGcCCGgCGCGcGUUCGCGc -3'
miRNA:   3'- gaaGUUuUGCaGGCgGUGC-CAAGCGC- -5'
30996 5' -51.4 NC_006560.1 + 18606 0.66 0.988917
Target:  5'- ---aGGGACGcCCGCguCGGcgCGCGg -3'
miRNA:   3'- gaagUUUUGCaGGCGguGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 18782 0.68 0.975025
Target:  5'- --gUAcgGCGUCCugcgGCCGCGGgacgccgUCGCGu -3'
miRNA:   3'- gaaGUuuUGCAGG----CGGUGCCa------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 23318 0.69 0.962868
Target:  5'- ---gAGAACG-CCGCCGCGGccggCGCc -3'
miRNA:   3'- gaagUUUUGCaGGCGGUGCCaa--GCGc -5'
30996 5' -51.4 NC_006560.1 + 25066 0.68 0.966232
Target:  5'- --gCGAGGCGgCCGCCGcCGGcgCGCc -3'
miRNA:   3'- gaaGUUUUGCaGGCGGU-GCCaaGCGc -5'
30996 5' -51.4 NC_006560.1 + 27650 0.69 0.955455
Target:  5'- --gCGGGGCGcggCCGCCGCGGaggUCGUc -3'
miRNA:   3'- gaaGUUUUGCa--GGCGGUGCCa--AGCGc -5'
30996 5' -51.4 NC_006560.1 + 27692 0.66 0.991484
Target:  5'- -gUCGGggUGcgCCGcCCGCGGUcccgagCGCGg -3'
miRNA:   3'- gaAGUUuuGCa-GGC-GGUGCCAa-----GCGC- -5'
30996 5' -51.4 NC_006560.1 + 28482 0.66 0.993556
Target:  5'- -cUCGAcg-GUCCGCCcCGGgcCGCGc -3'
miRNA:   3'- gaAGUUuugCAGGCGGuGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 30559 0.72 0.861128
Target:  5'- --cCGAGGCGg-CGCCGCGGcgCGCGc -3'
miRNA:   3'- gaaGUUUUGCagGCGGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 39614 0.67 0.987426
Target:  5'- --gCGGAGCG-CCGCgGCGGgcgUCgGCGu -3'
miRNA:   3'- gaaGUUUUGCaGGCGgUGCCa--AG-CGC- -5'
30996 5' -51.4 NC_006560.1 + 41286 0.66 0.992577
Target:  5'- ---aGGAACGUCCGg-GCGGUcgCGCGg -3'
miRNA:   3'- gaagUUUUGCAGGCggUGCCAa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 42408 0.66 0.99268
Target:  5'- --gCAcGACGUucgucaccgccaggCCGCCguugaagaucucguuGCGGUUCGCGu -3'
miRNA:   3'- gaaGUuUUGCA--------------GGCGG---------------UGCCAAGCGC- -5'
30996 5' -51.4 NC_006560.1 + 42917 0.67 0.982018
Target:  5'- --aCGAgucGACGg-CGCCGCGGUagCGCGg -3'
miRNA:   3'- gaaGUU---UUGCagGCGGUGCCAa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 43746 0.67 0.979874
Target:  5'- ------cGCGgCCGCCGCGGUgCGCc -3'
miRNA:   3'- gaaguuuUGCaGGCGGUGCCAaGCGc -5'
30996 5' -51.4 NC_006560.1 + 44806 0.71 0.916119
Target:  5'- --gCGAgacGACGUCCGCCGCGcGgcaggucugCGCGg -3'
miRNA:   3'- gaaGUU---UUGCAGGCGGUGC-Caa-------GCGC- -5'
30996 5' -51.4 NC_006560.1 + 48647 0.68 0.969375
Target:  5'- -cUCcgcGCGUCCGUCGCGGa--GCGg -3'
miRNA:   3'- gaAGuuuUGCAGGCGGUGCCaagCGC- -5'
30996 5' -51.4 NC_006560.1 + 51361 0.71 0.903805
Target:  5'- cCUUCGGGACGgaggccggCCGCCGCGcGcUCgGCGa -3'
miRNA:   3'- -GAAGUUUUGCa-------GGCGGUGC-CaAG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.