miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 5' -51.4 NC_006560.1 + 51405 0.67 0.979874
Target:  5'- -cUCAAcGCGgugcuggUCGCCGCGGUcuaCGCGc -3'
miRNA:   3'- gaAGUUuUGCa------GGCGGUGCCAa--GCGC- -5'
30996 5' -51.4 NC_006560.1 + 52175 0.68 0.973417
Target:  5'- -cUCGAGcgcGCGUCCGCCAUGcaacgacgcacgCGCGg -3'
miRNA:   3'- gaAGUUU---UGCAGGCGGUGCcaa---------GCGC- -5'
30996 5' -51.4 NC_006560.1 + 52737 0.7 0.942554
Target:  5'- --cCAGGuACG-CCGCCGCGGUggugggccugCGCGa -3'
miRNA:   3'- gaaGUUU-UGCaGGCGGUGCCAa---------GCGC- -5'
30996 5' -51.4 NC_006560.1 + 58893 0.7 0.921905
Target:  5'- gCUUCAuGAGCGUCgCGgCGCGGagcuccgUCGCGc -3'
miRNA:   3'- -GAAGU-UUUGCAG-GCgGUGCCa------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 60206 0.69 0.947097
Target:  5'- cCUUCuccaacauGCG-CCGCCGCGGUcacUCgGCGg -3'
miRNA:   3'- -GAAGuuu-----UGCaGGCGGUGCCA---AG-CGC- -5'
30996 5' -51.4 NC_006560.1 + 66914 0.66 0.990266
Target:  5'- -cUCGGcgccgcCGUCCGCCGCGGccccCGCc -3'
miRNA:   3'- gaAGUUuu----GCAGGCGGUGCCaa--GCGc -5'
30996 5' -51.4 NC_006560.1 + 70568 0.66 0.988917
Target:  5'- ------cGCGUUCGUCACGGU-CGCc -3'
miRNA:   3'- gaaguuuUGCAGGCGGUGCCAaGCGc -5'
30996 5' -51.4 NC_006560.1 + 70704 0.66 0.993556
Target:  5'- ------cGCG-CCGCCACGGgcccccggCGCGu -3'
miRNA:   3'- gaaguuuUGCaGGCGGUGCCaa------GCGC- -5'
30996 5' -51.4 NC_006560.1 + 70820 0.66 0.990266
Target:  5'- --cCAGcGCG-CCGCgGCGGUccgggagguccUCGCGg -3'
miRNA:   3'- gaaGUUuUGCaGGCGgUGCCA-----------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 74944 0.73 0.836805
Target:  5'- -gUCGAGGCGgCCGCC-CGGgccCGCGa -3'
miRNA:   3'- gaAGUUUUGCaGGCGGuGCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 81871 0.66 0.990266
Target:  5'- ---gGGGACGUCCGCC-CaGU-CGCGc -3'
miRNA:   3'- gaagUUUUGCAGGCGGuGcCAaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 82237 0.66 0.991484
Target:  5'- gUUCG--GCGUgCGCgCACGGcggcggUCGCGu -3'
miRNA:   3'- gAAGUuuUGCAgGCG-GUGCCa-----AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 82767 0.67 0.983986
Target:  5'- -gUCGAGgucgggggcccgGCGcCCGCgCGCGGgcgCGCGg -3'
miRNA:   3'- gaAGUUU------------UGCaGGCG-GUGCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 87840 0.66 0.992261
Target:  5'- -aUCucGACGUCgCucgaggugacgaagGCCGCGGUggggCGCGg -3'
miRNA:   3'- gaAGuuUUGCAG-G--------------CGGUGCCAa---GCGC- -5'
30996 5' -51.4 NC_006560.1 + 91126 0.71 0.916119
Target:  5'- ------uGCGgggCCGCCAccccCGGUUCGCGa -3'
miRNA:   3'- gaaguuuUGCa--GGCGGU----GCCAAGCGC- -5'
30996 5' -51.4 NC_006560.1 + 99214 0.68 0.975025
Target:  5'- ---gGAAGCGaCCGCgGCGGgcUGCGg -3'
miRNA:   3'- gaagUUUUGCaGGCGgUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 102425 0.68 0.977546
Target:  5'- --cCGcgGCGUCCGCCuccuCGGccgcCGCGg -3'
miRNA:   3'- gaaGUuuUGCAGGCGGu---GCCaa--GCGC- -5'
30996 5' -51.4 NC_006560.1 + 104946 0.68 0.972304
Target:  5'- ----cGGGCGUCCGUUugGGUucuucucgcUCGCGc -3'
miRNA:   3'- gaaguUUUGCAGGCGGugCCA---------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 106409 0.67 0.985785
Target:  5'- -cUCGAGGCGcgCCucgggcggcugGCCGCGGaggcggUCGCGg -3'
miRNA:   3'- gaAGUUUUGCa-GG-----------CGGUGCCa-----AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 107990 0.66 0.988917
Target:  5'- --cCGGGACGUCgGCCG-GGUcgUCGCc -3'
miRNA:   3'- gaaGUUUUGCAGgCGGUgCCA--AGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.