miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 5' -51.4 NC_006560.1 + 149126 0.72 0.853227
Target:  5'- aUUCAGGACcauuggcUCCGCCGCGG--CGCGg -3'
miRNA:   3'- gAAGUUUUGc------AGGCGGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 144331 0.67 0.985785
Target:  5'- -cUCuccGCGgccCCGCCGCGGg-CGCGa -3'
miRNA:   3'- gaAGuuuUGCa--GGCGGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 142959 0.66 0.991484
Target:  5'- --gCGAGGCGacgcgcgggCCGCCGCGGcgaGCGa -3'
miRNA:   3'- gaaGUUUUGCa--------GGCGGUGCCaagCGC- -5'
30996 5' -51.4 NC_006560.1 + 140959 1.09 0.009119
Target:  5'- cCUUCAAAACGUCCGCCACGGUUCGCGc -3'
miRNA:   3'- -GAAGUUUUGCAGGCGGUGCCAAGCGC- -5'
30996 5' -51.4 NC_006560.1 + 134975 0.68 0.966232
Target:  5'- aCUgcgCGAAGCaGUCCGCCA-GGccgCGCGc -3'
miRNA:   3'- -GAa--GUUUUG-CAGGCGGUgCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 133476 0.68 0.969375
Target:  5'- --cCGGGGCGUCCGgcguCUACGGgcgagCGCGa -3'
miRNA:   3'- gaaGUUUUGCAGGC----GGUGCCaa---GCGC- -5'
30996 5' -51.4 NC_006560.1 + 133251 0.67 0.979874
Target:  5'- --gCGAcACGcCCGUCGCGGUgaaccggacgUCGCGc -3'
miRNA:   3'- gaaGUUuUGCaGGCGGUGCCA----------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 132200 0.68 0.969375
Target:  5'- --gCGGGACGUCCugGCCgaggcggagGCGGUguugCGCGg -3'
miRNA:   3'- gaaGUUUUGCAGG--CGG---------UGCCAa---GCGC- -5'
30996 5' -51.4 NC_006560.1 + 131167 0.71 0.910085
Target:  5'- -cUCuGGGCGgcggCCGCCGCGGgggCGCc -3'
miRNA:   3'- gaAGuUUUGCa---GGCGGUGCCaa-GCGc -5'
30996 5' -51.4 NC_006560.1 + 128647 0.67 0.982018
Target:  5'- ----cGGACGcUCCGCCGCGGggagcugcUCGUGu -3'
miRNA:   3'- gaaguUUUGC-AGGCGGUGCCa-------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 127482 0.68 0.977546
Target:  5'- --gCGAGACGggcucgCCGcCCGCGGg-CGCGg -3'
miRNA:   3'- gaaGUUUUGCa-----GGC-GGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 127280 0.66 0.988917
Target:  5'- -cUCGGGGCGUCCaGgUGCGGgggUGCGg -3'
miRNA:   3'- gaAGUUUUGCAGG-CgGUGCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 127171 0.66 0.992577
Target:  5'- -cUCGGcGGCGUCCuGCCggcgGCGGUagCGCGc -3'
miRNA:   3'- gaAGUU-UUGCAGG-CGG----UGCCAa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 125654 0.68 0.972304
Target:  5'- cCUUCGAcgaGACGcUCGCC-CGGUuaugggccUCGCGg -3'
miRNA:   3'- -GAAGUU---UUGCaGGCGGuGCCA--------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 117673 0.69 0.955455
Target:  5'- gUUCGccGCGUacaUGCCGCGGgaCGCGc -3'
miRNA:   3'- gAAGUuuUGCAg--GCGGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 114658 0.67 0.982018
Target:  5'- gUUC-AAACGcCCGCC-CGGgugcCGCGa -3'
miRNA:   3'- gAAGuUUUGCaGGCGGuGCCaa--GCGC- -5'
30996 5' -51.4 NC_006560.1 + 109510 0.69 0.959277
Target:  5'- -----uGGCGUCgUGCCACGGgggacUCGCGa -3'
miRNA:   3'- gaaguuUUGCAG-GCGGUGCCa----AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 107990 0.66 0.988917
Target:  5'- --cCGGGACGUCgGCCG-GGUcgUCGCc -3'
miRNA:   3'- gaaGUUUUGCAGgCGGUgCCA--AGCGc -5'
30996 5' -51.4 NC_006560.1 + 106409 0.67 0.985785
Target:  5'- -cUCGAGGCGcgCCucgggcggcugGCCGCGGaggcggUCGCGg -3'
miRNA:   3'- gaAGUUUUGCa-GG-----------CGGUGCCa-----AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 104946 0.68 0.972304
Target:  5'- ----cGGGCGUCCGUUugGGUucuucucgcUCGCGc -3'
miRNA:   3'- gaaguUUUGCAGGCGGugCCA---------AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.