miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 5' -51.4 NC_006560.1 + 82767 0.67 0.983986
Target:  5'- -gUCGAGgucgggggcccgGCGcCCGCgCGCGGgcgCGCGg -3'
miRNA:   3'- gaAGUUU------------UGCaGGCG-GUGCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 128647 0.67 0.982018
Target:  5'- ----cGGACGcUCCGCCGCGGggagcugcUCGUGu -3'
miRNA:   3'- gaaguUUUGC-AGGCGGUGCCa-------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 114658 0.67 0.982018
Target:  5'- gUUC-AAACGcCCGCC-CGGgugcCGCGa -3'
miRNA:   3'- gAAGuUUUGCaGGCGGuGCCaa--GCGC- -5'
30996 5' -51.4 NC_006560.1 + 42917 0.67 0.982018
Target:  5'- --aCGAgucGACGg-CGCCGCGGUagCGCGg -3'
miRNA:   3'- gaaGUU---UUGCagGCGGUGCCAa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 51405 0.67 0.979874
Target:  5'- -cUCAAcGCGgugcuggUCGCCGCGGUcuaCGCGc -3'
miRNA:   3'- gaAGUUuUGCa------GGCGGUGCCAa--GCGC- -5'
30996 5' -51.4 NC_006560.1 + 133251 0.67 0.979874
Target:  5'- --gCGAcACGcCCGUCGCGGUgaaccggacgUCGCGc -3'
miRNA:   3'- gaaGUUuUGCaGGCGGUGCCA----------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 43746 0.67 0.979874
Target:  5'- ------cGCGgCCGCCGCGGUgCGCc -3'
miRNA:   3'- gaaguuuUGCaGGCGGUGCCAaGCGc -5'
30996 5' -51.4 NC_006560.1 + 102425 0.68 0.977546
Target:  5'- --cCGcgGCGUCCGCCuccuCGGccgcCGCGg -3'
miRNA:   3'- gaaGUuuUGCAGGCGGu---GCCaa--GCGC- -5'
30996 5' -51.4 NC_006560.1 + 127482 0.68 0.977546
Target:  5'- --gCGAGACGggcucgCCGcCCGCGGg-CGCGg -3'
miRNA:   3'- gaaGUUUUGCa-----GGC-GGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 99214 0.68 0.975025
Target:  5'- ---gGAAGCGaCCGCgGCGGgcUGCGg -3'
miRNA:   3'- gaagUUUUGCaGGCGgUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 18782 0.68 0.975025
Target:  5'- --gUAcgGCGUCCugcgGCCGCGGgacgccgUCGCGu -3'
miRNA:   3'- gaaGUuuUGCAGG----CGGUGCCa------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 4628 0.68 0.975025
Target:  5'- -cUCGucGGCGUCCaggggcacggGCCGCGGccgCGCGg -3'
miRNA:   3'- gaAGUu-UUGCAGG----------CGGUGCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 11564 0.68 0.974762
Target:  5'- uCUUCGGucuccccGACcUCCGCCGCcucGGgggUCGCGg -3'
miRNA:   3'- -GAAGUU-------UUGcAGGCGGUG---CCa--AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 52175 0.68 0.973417
Target:  5'- -cUCGAGcgcGCGUCCGCCAUGcaacgacgcacgCGCGg -3'
miRNA:   3'- gaAGUUU---UGCAGGCGGUGCcaa---------GCGC- -5'
30996 5' -51.4 NC_006560.1 + 125654 0.68 0.972304
Target:  5'- cCUUCGAcgaGACGcUCGCC-CGGUuaugggccUCGCGg -3'
miRNA:   3'- -GAAGUU---UUGCaGGCGGuGCCA--------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 104946 0.68 0.972304
Target:  5'- ----cGGGCGUCCGUUugGGUucuucucgcUCGCGc -3'
miRNA:   3'- gaaguUUUGCAGGCGGugCCA---------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 132200 0.68 0.969375
Target:  5'- --gCGGGACGUCCugGCCgaggcggagGCGGUguugCGCGg -3'
miRNA:   3'- gaaGUUUUGCAGG--CGG---------UGCCAa---GCGC- -5'
30996 5' -51.4 NC_006560.1 + 133476 0.68 0.969375
Target:  5'- --cCGGGGCGUCCGgcguCUACGGgcgagCGCGa -3'
miRNA:   3'- gaaGUUUUGCAGGC----GGUGCCaa---GCGC- -5'
30996 5' -51.4 NC_006560.1 + 48647 0.68 0.969375
Target:  5'- -cUCcgcGCGUCCGUCGCGGa--GCGg -3'
miRNA:   3'- gaAGuuuUGCAGGCGGUGCCaagCGC- -5'
30996 5' -51.4 NC_006560.1 + 25066 0.68 0.966232
Target:  5'- --gCGAGGCGgCCGCCGcCGGcgCGCc -3'
miRNA:   3'- gaaGUUUUGCaGGCGGU-GCCaaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.