miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 3' -59.5 NC_006560.1 + 75344 0.68 0.593071
Target:  5'- aGGUGgucgGGGCgacgcGGCGGCGCGCCgaCGa -3'
miRNA:   3'- aCCACaa--CUCG-----UCGUCGUGCGGggGC- -5'
30997 3' -59.5 NC_006560.1 + 56449 0.68 0.593071
Target:  5'- gGGUcGagGAgGCGGCccucGGCGCGCCCUCGc -3'
miRNA:   3'- aCCA-CaaCU-CGUCG----UCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 125835 0.68 0.593071
Target:  5'- gGGUGgUGAcGCAGCccccgAGC-CaGCCCCCGc -3'
miRNA:   3'- aCCACaACU-CGUCG-----UCGuG-CGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 144131 0.69 0.583041
Target:  5'- cGGcGgcc-GCGGCGGCGCcCCCCCGg -3'
miRNA:   3'- aCCaCaacuCGUCGUCGUGcGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 133961 0.69 0.583041
Target:  5'- gGGUcGUcggGGGCcGCGGCGCcccCCCCCGg -3'
miRNA:   3'- aCCA-CAa--CUCGuCGUCGUGc--GGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 125443 0.69 0.583041
Target:  5'- cUGGUGaccuucaucGGGCGGCAccGCACGCCCgaCGa -3'
miRNA:   3'- -ACCACaa-------CUCGUCGU--CGUGCGGGg-GC- -5'
30997 3' -59.5 NC_006560.1 + 88757 0.69 0.563091
Target:  5'- cGGccg-GGGgGGCGGCGCGgaCCCCCGg -3'
miRNA:   3'- aCCacaaCUCgUCGUCGUGC--GGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 150209 0.69 0.563091
Target:  5'- gGGUGgcGAGCGcGCGG-ACGCUgCCGg -3'
miRNA:   3'- aCCACaaCUCGU-CGUCgUGCGGgGGC- -5'
30997 3' -59.5 NC_006560.1 + 100175 0.69 0.560113
Target:  5'- cGGUGgaGAGCAGC-GCGCgggugagcgucucgGCgCCCGg -3'
miRNA:   3'- aCCACaaCUCGUCGuCGUG--------------CGgGGGC- -5'
30997 3' -59.5 NC_006560.1 + 115465 0.69 0.543328
Target:  5'- cUGGUGgcGcGCGGCAucCGCGCCCUCa -3'
miRNA:   3'- -ACCACaaCuCGUCGUc-GUGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 130412 0.69 0.543328
Target:  5'- cUGGcGgcccugGAGCgcgaggugGGCGGCGCGCCCCUc -3'
miRNA:   3'- -ACCaCaa----CUCG--------UCGUCGUGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 143466 0.69 0.533531
Target:  5'- aGGUGUcuucgcagaagUGGGCGGgcgccCGGCGuccccCGCCCCCGu -3'
miRNA:   3'- aCCACA-----------ACUCGUC-----GUCGU-----GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 73675 0.69 0.533531
Target:  5'- cGGUGgcgcgGcGCGGCGGCccccuggcggugGCgGCCCCCGa -3'
miRNA:   3'- aCCACaa---CuCGUCGUCG------------UG-CGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 58349 0.7 0.523798
Target:  5'- ------gGAGgGGgGGCGCGCCCCCGu -3'
miRNA:   3'- accacaaCUCgUCgUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 35770 0.7 0.504542
Target:  5'- cGGUGUuccuucgccUGAcgcccgggagGCGGCuGCGguCGCCCCCGg -3'
miRNA:   3'- aCCACA---------ACU----------CGUCGuCGU--GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 114922 0.7 0.495029
Target:  5'- cGGccccaGAGCGGCcccgguuucGCACGCCCCCGc -3'
miRNA:   3'- aCCacaa-CUCGUCGu--------CGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 4033 0.7 0.495029
Target:  5'- cGGcGUcccgGGGCGGCGGCGCGgCgCCGg -3'
miRNA:   3'- aCCaCAa---CUCGUCGUCGUGCgGgGGC- -5'
30997 3' -59.5 NC_006560.1 + 76236 0.7 0.495029
Target:  5'- cUGGUGcgcgccaAGCAGCAGCGCGCCgaggCCaCGg -3'
miRNA:   3'- -ACCACaac----UCGUCGUCGUGCGG----GG-GC- -5'
30997 3' -59.5 NC_006560.1 + 44328 0.7 0.483723
Target:  5'- gGGgcgcucuGCGGCuggggGGCGCGCCCCCGg -3'
miRNA:   3'- aCCacaacu-CGUCG-----UCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 76738 0.7 0.476254
Target:  5'- cGGcGcgcGAGCAGCuGUGCGCCCuCCGg -3'
miRNA:   3'- aCCaCaa-CUCGUCGuCGUGCGGG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.