miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 3' -59.5 NC_006560.1 + 54663 0.67 0.653586
Target:  5'- gGGUcgcGggGGcGCGGCAGCcgccggccGCGCCCUCGu -3'
miRNA:   3'- aCCA---CaaCU-CGUCGUCG--------UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 39326 0.67 0.650561
Target:  5'- cGGUGggGcGgGGCcGCccgcccucgcgccuGCGCCCCCGg -3'
miRNA:   3'- aCCACaaCuCgUCGuCG--------------UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 12768 0.68 0.643497
Target:  5'- ---aGUUGGGCGGCAGCugGgCCgagaCCGc -3'
miRNA:   3'- accaCAACUCGUCGUCGugCgGG----GGC- -5'
30997 3' -59.5 NC_006560.1 + 31857 0.68 0.643497
Target:  5'- cGGgg--GGGCcgAGgGGgGCGCCCCCGg -3'
miRNA:   3'- aCCacaaCUCG--UCgUCgUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 57667 0.68 0.643497
Target:  5'- ------cGGGCGGCgaGGCGCGCCCgCCGc -3'
miRNA:   3'- accacaaCUCGUCG--UCGUGCGGG-GGC- -5'
30997 3' -59.5 NC_006560.1 + 84340 0.68 0.643497
Target:  5'- cGG-GgcccGCgAGCGGCGCGCCuCCCGg -3'
miRNA:   3'- aCCaCaacuCG-UCGUCGUGCGG-GGGC- -5'
30997 3' -59.5 NC_006560.1 + 130317 0.68 0.643497
Target:  5'- cGGU----GGCGGCGGCGCGggccgcggcguCCCCCGc -3'
miRNA:   3'- aCCAcaacUCGUCGUCGUGC-----------GGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 13358 0.68 0.643497
Target:  5'- cGGUGa--GGUuGUAGCGCGCgCCCGg -3'
miRNA:   3'- aCCACaacUCGuCGUCGUGCGgGGGC- -5'
30997 3' -59.5 NC_006560.1 + 79458 0.68 0.633399
Target:  5'- cGGcGcgUGAGCccccGGCGGCGCGugagcCCCCCGc -3'
miRNA:   3'- aCCaCa-ACUCG----UCGUCGUGC-----GGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 50214 0.68 0.632389
Target:  5'- cGGgc---GGCGGCGGCGCGCguccgccCCCCGg -3'
miRNA:   3'- aCCacaacUCGUCGUCGUGCG-------GGGGC- -5'
30997 3' -59.5 NC_006560.1 + 96332 0.68 0.629359
Target:  5'- gUGGUGcaguucGAGCAGCcccggccgugcccGCGCGCgCCCGa -3'
miRNA:   3'- -ACCACaa----CUCGUCGu------------CGUGCGgGGGC- -5'
30997 3' -59.5 NC_006560.1 + 131389 0.68 0.6233
Target:  5'- cGGUGcUG-GCgGGCGcuggccgcggacGCGCGCCCCUGg -3'
miRNA:   3'- aCCACaACuCG-UCGU------------CGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 19696 0.68 0.613207
Target:  5'- cUGGcGUcgGAGCGGUcGCACGCCaCgCCGu -3'
miRNA:   3'- -ACCaCAa-CUCGUCGuCGUGCGG-G-GGC- -5'
30997 3' -59.5 NC_006560.1 + 109182 0.68 0.613207
Target:  5'- cGGUcgcgUGGGCGGCAgacggaguagacGCAC-CCCCCGc -3'
miRNA:   3'- aCCAca--ACUCGUCGU------------CGUGcGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 121408 0.68 0.609174
Target:  5'- aGGUGUUGAggacgcuGUAGUaggcguugcgcuggGGCACGacguCCCCCGg -3'
miRNA:   3'- aCCACAACU-------CGUCG--------------UCGUGC----GGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 133694 0.68 0.603129
Target:  5'- cGG-GaUGGGCGcgcGCAGCACGUCCgCGa -3'
miRNA:   3'- aCCaCaACUCGU---CGUCGUGCGGGgGC- -5'
30997 3' -59.5 NC_006560.1 + 110550 0.68 0.603129
Target:  5'- gGGUGggugGGGcCAGCGGgguauauaaacCGCGCUCCCGc -3'
miRNA:   3'- aCCACaa--CUC-GUCGUC-----------GUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 57422 0.68 0.603129
Target:  5'- cGGcGaccucgGGGCGGCAgaaccgcgcGCugGCCCCCGc -3'
miRNA:   3'- aCCaCaa----CUCGUCGU---------CGugCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 37315 0.68 0.603129
Target:  5'- cUGGUGUUccuGUGGCgcuAGCcCGCCCCCu -3'
miRNA:   3'- -ACCACAAcu-CGUCG---UCGuGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 18559 0.68 0.602122
Target:  5'- gGGUGgucgGGGCGGCGgaccucuGCGCGCCguuCCUGg -3'
miRNA:   3'- aCCACaa--CUCGUCGU-------CGUGCGG---GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.