miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 3' -59.5 NC_006560.1 + 78391 0.66 0.733001
Target:  5'- cUGGUGcUG-GCGGC--CACGCUCCUGg -3'
miRNA:   3'- -ACCACaACuCGUCGucGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 131164 0.66 0.733001
Target:  5'- cGGcucUGGGCGGCGGC-CGCCgcgggggcgCCCGg -3'
miRNA:   3'- aCCacaACUCGUCGUCGuGCGG---------GGGC- -5'
30997 3' -59.5 NC_006560.1 + 63707 0.66 0.723281
Target:  5'- gUGGaagcUGgaGAGguGCAuGC-CGCCCCUGu -3'
miRNA:   3'- -ACC----ACaaCUCguCGU-CGuGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 52542 0.66 0.722304
Target:  5'- gGGcGUcGAGCGGCGGCcucugccGCGCCauCCUGg -3'
miRNA:   3'- aCCaCAaCUCGUCGUCG-------UGCGG--GGGC- -5'
30997 3' -59.5 NC_006560.1 + 124923 0.66 0.713483
Target:  5'- cGGcUGccUGAGCcccaccccCGGCACGCCCCUGc -3'
miRNA:   3'- aCC-ACa-ACUCGuc------GUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 70662 0.66 0.713483
Target:  5'- cUGGcgcgcuGGCGGCGGCugGCCgCCGc -3'
miRNA:   3'- -ACCacaac-UCGUCGUCGugCGGgGGC- -5'
30997 3' -59.5 NC_006560.1 + 127401 0.66 0.7125
Target:  5'- cGGcGaUGAGCAGCcccaggagacagAGCacggagacgacgaACGCCCCCa -3'
miRNA:   3'- aCCaCaACUCGUCG------------UCG-------------UGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 127089 0.66 0.709545
Target:  5'- cGGUGaccuGCAGCAGCcagaggcaggcguUGCCCCCc -3'
miRNA:   3'- aCCACaacuCGUCGUCGu------------GCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 66452 0.66 0.709545
Target:  5'- gGGUGUgaaccaUGgcccgcaggcacucGGcCAGCgcguccaGGCGCGCCCCCGc -3'
miRNA:   3'- aCCACA------AC--------------UC-GUCG-------UCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 136931 0.67 0.703619
Target:  5'- cUGGUGUUcGGCuucGGCGGCAC-CUUCCGc -3'
miRNA:   3'- -ACCACAAcUCG---UCGUCGUGcGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 38323 0.67 0.683722
Target:  5'- uUGcGUG-UGuGUGGCGGgcgagaACGCCCCCGg -3'
miRNA:   3'- -AC-CACaACuCGUCGUCg-----UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 14555 0.67 0.683722
Target:  5'- cGGgaggGGGCGGCGGCgcucACGCCUCgGa -3'
miRNA:   3'- aCCacaaCUCGUCGUCG----UGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 79822 0.67 0.677717
Target:  5'- cGGUGgcgccGGGCggcgauuucGGCGGCGCggaccgagccgggccGCCCCCGc -3'
miRNA:   3'- aCCACaa---CUCG---------UCGUCGUG---------------CGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 133136 0.67 0.673707
Target:  5'- cGGUGggcggccUGGccGCGGCAGCGCGCgaaguaguCCUCGg -3'
miRNA:   3'- aCCACa------ACU--CGUCGUCGUGCG--------GGGGC- -5'
30997 3' -59.5 NC_006560.1 + 29485 0.67 0.673707
Target:  5'- gGGaGggGGGaAGgGGCGCGUCCCCGc -3'
miRNA:   3'- aCCaCaaCUCgUCgUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 99722 0.67 0.673707
Target:  5'- gGGUGgggGGGC-GC-GUACGCCgCCGg -3'
miRNA:   3'- aCCACaa-CUCGuCGuCGUGCGGgGGC- -5'
30997 3' -59.5 NC_006560.1 + 99764 0.67 0.673707
Target:  5'- gGGUGgggGGGC-GC-GUACGCCgCCGg -3'
miRNA:   3'- aCCACaa-CUCGuCGuCGUGCGGgGGC- -5'
30997 3' -59.5 NC_006560.1 + 45706 0.67 0.670696
Target:  5'- cGGUGUaggUGAcguagaucccGCGGCgcaggcgcgccgcgGGCucGCGCCCCCGc -3'
miRNA:   3'- aCCACA---ACU----------CGUCG--------------UCG--UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 34931 0.67 0.653586
Target:  5'- aGGUuucgGGGCcGCuccCGCGCCCCCGg -3'
miRNA:   3'- aCCAcaa-CUCGuCGuc-GUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 133790 0.67 0.653586
Target:  5'- uUGGUGUggcgcgagaucuUGAagcagcGCAGCAGCucgUGCUCCCa -3'
miRNA:   3'- -ACCACA------------ACU------CGUCGUCGu--GCGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.