miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 3' -59.5 NC_006560.1 + 35390 0.66 0.761617
Target:  5'- aGGgGggGAGCuccAGCGGCcggcgccggccGCGCCCgCCGc -3'
miRNA:   3'- aCCaCaaCUCG---UCGUCG-----------UGCGGG-GGC- -5'
30997 3' -59.5 NC_006560.1 + 86398 0.66 0.761617
Target:  5'- gUGGaGgcaGGGCAGCAggccgugcuGCACGCCCgUGa -3'
miRNA:   3'- -ACCaCaa-CUCGUCGU---------CGUGCGGGgGC- -5'
30997 3' -59.5 NC_006560.1 + 119509 0.66 0.758797
Target:  5'- aGGUGccuccGGGCcGCggggccgcgcgcuaAGCGCGCCCCgCGg -3'
miRNA:   3'- aCCACaa---CUCGuCG--------------UCGUGCGGGG-GC- -5'
30997 3' -59.5 NC_006560.1 + 94505 0.66 0.752179
Target:  5'- cGGgcgcGAGCcGCgAGCGCGgCCCCGc -3'
miRNA:   3'- aCCacaaCUCGuCG-UCGUGCgGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 30469 0.66 0.752179
Target:  5'- aGGaGgagGAGCAGgAGCgggagGCGCCCCgGc -3'
miRNA:   3'- aCCaCaa-CUCGUCgUCG-----UGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 38661 0.66 0.752179
Target:  5'- ---cGUccAGCGGCAGCACGCCgCgGg -3'
miRNA:   3'- accaCAacUCGUCGUCGUGCGGgGgC- -5'
30997 3' -59.5 NC_006560.1 + 54485 0.66 0.752179
Target:  5'- gGGUGaUG-GCAgaugcGCAGCGCcggGCCCUCGc -3'
miRNA:   3'- aCCACaACuCGU-----CGUCGUG---CGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 5673 0.66 0.752179
Target:  5'- gGGgcgcggGGGCGGcCGGCgGCGCCgCCCGu -3'
miRNA:   3'- aCCacaa--CUCGUC-GUCG-UGCGG-GGGC- -5'
30997 3' -59.5 NC_006560.1 + 22351 0.66 0.752179
Target:  5'- cGGcgGggGAGgaggacgaCGGCGGCGacgggcacccCGCCCCCGg -3'
miRNA:   3'- aCCa-CaaCUC--------GUCGUCGU----------GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 34931 0.67 0.653586
Target:  5'- aGGUuucgGGGCcGCuccCGCGCCCCCGg -3'
miRNA:   3'- aCCAcaa-CUCGuCGuc-GUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 54663 0.67 0.653586
Target:  5'- gGGUcgcGggGGcGCGGCAGCcgccggccGCGCCCUCGu -3'
miRNA:   3'- aCCA---CaaCU-CGUCGUCG--------UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 45706 0.67 0.670696
Target:  5'- cGGUGUaggUGAcguagaucccGCGGCgcaggcgcgccgcgGGCucGCGCCCCCGc -3'
miRNA:   3'- aCCACA---ACU----------CGUCG--------------UCG--UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 133136 0.67 0.673707
Target:  5'- cGGUGggcggccUGGccGCGGCAGCGCGCgaaguaguCCUCGg -3'
miRNA:   3'- aCCACa------ACU--CGUCGUCGUGCG--------GGGGC- -5'
30997 3' -59.5 NC_006560.1 + 29485 0.67 0.673707
Target:  5'- gGGaGggGGGaAGgGGCGCGUCCCCGc -3'
miRNA:   3'- aCCaCaaCUCgUCgUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 99722 0.67 0.673707
Target:  5'- gGGUGgggGGGC-GC-GUACGCCgCCGg -3'
miRNA:   3'- aCCACaa-CUCGuCGuCGUGCGGgGGC- -5'
30997 3' -59.5 NC_006560.1 + 99764 0.67 0.673707
Target:  5'- gGGUGgggGGGC-GC-GUACGCCgCCGg -3'
miRNA:   3'- aCCACaa-CUCGuCGuCGUGCGGgGGC- -5'
30997 3' -59.5 NC_006560.1 + 79822 0.67 0.677717
Target:  5'- cGGUGgcgccGGGCggcgauuucGGCGGCGCggaccgagccgggccGCCCCCGc -3'
miRNA:   3'- aCCACaa---CUCG---------UCGUCGUG---------------CGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 38323 0.67 0.683722
Target:  5'- uUGcGUG-UGuGUGGCGGgcgagaACGCCCCCGg -3'
miRNA:   3'- -AC-CACaACuCGUCGUCg-----UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 14555 0.67 0.683722
Target:  5'- cGGgaggGGGCGGCGGCgcucACGCCUCgGa -3'
miRNA:   3'- aCCacaaCUCGUCGUCG----UGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 133790 0.67 0.653586
Target:  5'- uUGGUGUggcgcgagaucuUGAagcagcGCAGCAGCucgUGCUCCCa -3'
miRNA:   3'- -ACCACA------------ACU------CGUCGUCGu--GCGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.