miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 3' -59.5 NC_006560.1 + 29485 0.67 0.673707
Target:  5'- gGGaGggGGGaAGgGGCGCGUCCCCGc -3'
miRNA:   3'- aCCaCaaCUCgUCgUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 30469 0.66 0.752179
Target:  5'- aGGaGgagGAGCAGgAGCgggagGCGCCCCgGc -3'
miRNA:   3'- aCCaCaa-CUCGUCgUCG-----UGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 31857 0.68 0.643497
Target:  5'- cGGgg--GGGCcgAGgGGgGCGCCCCCGg -3'
miRNA:   3'- aCCacaaCUCG--UCgUCgUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 32513 0.72 0.372001
Target:  5'- aGGgGUaGAGCAgGUAGgGCGCCCCCc -3'
miRNA:   3'- aCCaCAaCUCGU-CGUCgUGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 34355 0.66 0.733001
Target:  5'- gGGuUGggGAGgAGgGGgGCGCCCgCCGc -3'
miRNA:   3'- aCC-ACaaCUCgUCgUCgUGCGGG-GGC- -5'
30997 3' -59.5 NC_006560.1 + 34931 0.67 0.653586
Target:  5'- aGGUuucgGGGCcGCuccCGCGCCCCCGg -3'
miRNA:   3'- aCCAcaa-CUCGuCGuc-GUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 35390 0.66 0.761617
Target:  5'- aGGgGggGAGCuccAGCGGCcggcgccggccGCGCCCgCCGc -3'
miRNA:   3'- aCCaCaaCUCG---UCGUCG-----------UGCGGG-GGC- -5'
30997 3' -59.5 NC_006560.1 + 35770 0.7 0.504542
Target:  5'- cGGUGUuccuucgccUGAcgcccgggagGCGGCuGCGguCGCCCCCGg -3'
miRNA:   3'- aCCACA---------ACU----------CGUCGuCGU--GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 37315 0.68 0.603129
Target:  5'- cUGGUGUUccuGUGGCgcuAGCcCGCCCCCu -3'
miRNA:   3'- -ACCACAAcu-CGUCG---UCGuGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 38323 0.67 0.683722
Target:  5'- uUGcGUG-UGuGUGGCGGgcgagaACGCCCCCGg -3'
miRNA:   3'- -AC-CACaACuCGUCGUCg-----UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 38661 0.66 0.752179
Target:  5'- ---cGUccAGCGGCAGCACGCCgCgGg -3'
miRNA:   3'- accaCAacUCGUCGUCGUGCGGgGgC- -5'
30997 3' -59.5 NC_006560.1 + 39326 0.67 0.650561
Target:  5'- cGGUGggGcGgGGCcGCccgcccucgcgccuGCGCCCCCGg -3'
miRNA:   3'- aCCACaaCuCgUCGuCG--------------UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 44328 0.7 0.483723
Target:  5'- gGGgcgcucuGCGGCuggggGGCGCGCCCCCGg -3'
miRNA:   3'- aCCacaacu-CGUCG-----UCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 45706 0.67 0.670696
Target:  5'- cGGUGUaggUGAcguagaucccGCGGCgcaggcgcgccgcgGGCucGCGCCCCCGc -3'
miRNA:   3'- aCCACA---ACU----------CGUCG--------------UCG--UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 50214 0.68 0.632389
Target:  5'- cGGgc---GGCGGCGGCGCGCguccgccCCCCGg -3'
miRNA:   3'- aCCacaacUCGUCGUCGUGCG-------GGGGC- -5'
30997 3' -59.5 NC_006560.1 + 50265 0.72 0.3712
Target:  5'- ------cGGGCGGCcgggcucGGCGCGCCCCCGg -3'
miRNA:   3'- accacaaCUCGUCG-------UCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 52542 0.66 0.722304
Target:  5'- gGGcGUcGAGCGGCGGCcucugccGCGCCauCCUGg -3'
miRNA:   3'- aCCaCAaCUCGUCGUCG-------UGCGG--GGGC- -5'
30997 3' -59.5 NC_006560.1 + 54485 0.66 0.752179
Target:  5'- gGGUGaUG-GCAgaugcGCAGCGCcggGCCCUCGc -3'
miRNA:   3'- aCCACaACuCGU-----CGUCGUG---CGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 54663 0.67 0.653586
Target:  5'- gGGUcgcGggGGcGCGGCAGCcgccggccGCGCCCUCGu -3'
miRNA:   3'- aCCA---CaaCU-CGUCGUCG--------UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 56449 0.68 0.593071
Target:  5'- gGGUcGagGAgGCGGCccucGGCGCGCCCUCGc -3'
miRNA:   3'- aCCA-CaaCU-CGUCG----UCGUGCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.