miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 3' -59.5 NC_006560.1 + 518 0.72 0.396589
Target:  5'- cGGgcgccGggGGGCGGCGGCcggccGCGCCCCgGg -3'
miRNA:   3'- aCCa----CaaCUCGUCGUCG-----UGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 114055 0.72 0.405014
Target:  5'- -cGUGgccacGGCGGCcguGCGCGCCCCCGu -3'
miRNA:   3'- acCACaac--UCGUCGu--CGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 149363 0.72 0.413551
Target:  5'- cGGggagGAGCcgGGCGGCGcCGCCCCCc -3'
miRNA:   3'- aCCacaaCUCG--UCGUCGU-GCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 22158 0.71 0.439813
Target:  5'- aUGGUGgagGAGaCGGCccgGGCGCuGUCCCCGc -3'
miRNA:   3'- -ACCACaa-CUC-GUCG---UCGUG-CGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 15070 0.71 0.448777
Target:  5'- cGGUGggGGGCGGgGGcuCugGCCCCUc -3'
miRNA:   3'- aCCACaaCUCGUCgUC--GugCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 92368 0.71 0.448777
Target:  5'- cUGGUcucUGcGCGGCGGCGCGgCCCUGg -3'
miRNA:   3'- -ACCAca-ACuCGUCGUCGUGCgGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 26145 0.71 0.467
Target:  5'- cUGcGUGggGGcGCGGCAGgGgcccCGCCCCCGg -3'
miRNA:   3'- -AC-CACaaCU-CGUCGUCgU----GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 76738 0.7 0.476254
Target:  5'- cGGcGcgcGAGCAGCuGUGCGCCCuCCGg -3'
miRNA:   3'- aCCaCaa-CUCGUCGuCGUGCGGG-GGC- -5'
30997 3' -59.5 NC_006560.1 + 44328 0.7 0.483723
Target:  5'- gGGgcgcucuGCGGCuggggGGCGCGCCCCCGg -3'
miRNA:   3'- aCCacaacu-CGUCG-----UCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 76236 0.7 0.495029
Target:  5'- cUGGUGcgcgccaAGCAGCAGCGCGCCgaggCCaCGg -3'
miRNA:   3'- -ACCACaac----UCGUCGUCGUGCGG----GG-GC- -5'
30997 3' -59.5 NC_006560.1 + 4033 0.7 0.495029
Target:  5'- cGGcGUcccgGGGCGGCGGCGCGgCgCCGg -3'
miRNA:   3'- aCCaCAa---CUCGUCGUCGUGCgGgGGC- -5'
30997 3' -59.5 NC_006560.1 + 114922 0.7 0.495029
Target:  5'- cGGccccaGAGCGGCcccgguuucGCACGCCCCCGc -3'
miRNA:   3'- aCCacaa-CUCGUCGu--------CGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 35770 0.7 0.504542
Target:  5'- cGGUGUuccuucgccUGAcgcccgggagGCGGCuGCGguCGCCCCCGg -3'
miRNA:   3'- aCCACA---------ACU----------CGUCGuCGU--GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 58349 0.7 0.523798
Target:  5'- ------gGAGgGGgGGCGCGCCCCCGu -3'
miRNA:   3'- accacaaCUCgUCgUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 143466 0.69 0.533531
Target:  5'- aGGUGUcuucgcagaagUGGGCGGgcgccCGGCGuccccCGCCCCCGu -3'
miRNA:   3'- aCCACA-----------ACUCGUC-----GUCGU-----GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 73675 0.69 0.533531
Target:  5'- cGGUGgcgcgGcGCGGCGGCccccuggcggugGCgGCCCCCGa -3'
miRNA:   3'- aCCACaa---CuCGUCGUCG------------UG-CGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 130412 0.69 0.543328
Target:  5'- cUGGcGgcccugGAGCgcgaggugGGCGGCGCGCCCCUc -3'
miRNA:   3'- -ACCaCaa----CUCG--------UCGUCGUGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 115465 0.69 0.543328
Target:  5'- cUGGUGgcGcGCGGCAucCGCGCCCUCa -3'
miRNA:   3'- -ACCACaaCuCGUCGUc-GUGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 100175 0.69 0.560113
Target:  5'- cGGUGgaGAGCAGC-GCGCgggugagcgucucgGCgCCCGg -3'
miRNA:   3'- aCCACaaCUCGUCGuCGUG--------------CGgGGGC- -5'
30997 3' -59.5 NC_006560.1 + 150209 0.69 0.563091
Target:  5'- gGGUGgcGAGCGcGCGG-ACGCUgCCGg -3'
miRNA:   3'- aCCACaaCUCGU-CGUCgUGCGGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.