miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 3' -59.5 NC_006560.1 + 139875 1.08 0.001497
Target:  5'- gUGGUGUUGAGCAGCAGCACGCCCCCGc -3'
miRNA:   3'- -ACCACAACUCGUCGUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 127292 0.83 0.075126
Target:  5'- aGGUGcgGGGguGCGGcCACGCCCCCGc -3'
miRNA:   3'- aCCACaaCUCguCGUC-GUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 118646 0.8 0.129776
Target:  5'- cGGUGgcgugGGGCGGCcGCaACGCCCCCGc -3'
miRNA:   3'- aCCACaa---CUCGUCGuCG-UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 16633 0.77 0.20879
Target:  5'- gGGUGUacgccGGGCGGCGguuGCGCGCCgCCCGg -3'
miRNA:   3'- aCCACAa----CUCGUCGU---CGUGCGG-GGGC- -5'
30997 3' -59.5 NC_006560.1 + 26387 0.76 0.213931
Target:  5'- cGGccGggGcGCAGgGGCGCGCCCCCGg -3'
miRNA:   3'- aCCa-CaaCuCGUCgUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 61259 0.76 0.224539
Target:  5'- cGaGUGagcgGAGCGGCucgcccGCACGCCCCCGc -3'
miRNA:   3'- aC-CACaa--CUCGUCGu-----CGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 21266 0.76 0.224539
Target:  5'- cGGUGa-GGGCGGCGGCggcgcgGCGCCCUCGa -3'
miRNA:   3'- aCCACaaCUCGUCGUCG------UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 103114 0.75 0.265218
Target:  5'- cGGcGgcgGAcGCgggGGCGGCGCGCCCCCGg -3'
miRNA:   3'- aCCaCaa-CU-CG---UCGUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 924 0.75 0.270229
Target:  5'- cGGUGgaggccuagggGAGCccGGCAGCccCGCCCCCGa -3'
miRNA:   3'- aCCACaa---------CUCG--UCGUCGu-GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 89019 0.75 0.271494
Target:  5'- cGGUcugUGGGCGG-GGCGCGUCCCCGg -3'
miRNA:   3'- aCCAca-ACUCGUCgUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 2771 0.75 0.271494
Target:  5'- cGcGUGgaGAGCAGgAGCACGCCCUg- -3'
miRNA:   3'- aC-CACaaCUCGUCgUCGUGCGGGGgc -5'
30997 3' -59.5 NC_006560.1 + 58378 0.75 0.277889
Target:  5'- cGG-GggGAGCGGCGcccGCgucgGCGCCCCCGg -3'
miRNA:   3'- aCCaCaaCUCGUCGU---CG----UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 122564 0.74 0.297793
Target:  5'- cGGUGgcgacUGAGcCGGuCGGCcCGCCCCCGc -3'
miRNA:   3'- aCCACa----ACUC-GUC-GUCGuGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 17702 0.74 0.318785
Target:  5'- gGGUcgUGGGCGGCGGCcggaaaaccgACGCCCCgGg -3'
miRNA:   3'- aCCAcaACUCGUCGUCG----------UGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 142674 0.73 0.326025
Target:  5'- gGGUGagGGGCGGCGGCggaccggaggggGCGCCCggCCGg -3'
miRNA:   3'- aCCACaaCUCGUCGUCG------------UGCGGG--GGC- -5'
30997 3' -59.5 NC_006560.1 + 120509 0.73 0.333387
Target:  5'- aGGUGgucgcgGGGCAGCGGgGCGCCgagaggauccggCCCGa -3'
miRNA:   3'- aCCACaa----CUCGUCGUCgUGCGG------------GGGC- -5'
30997 3' -59.5 NC_006560.1 + 85420 0.73 0.338612
Target:  5'- cGGUGUUGAGgGGCacgccgugcgccacGGCGUGCCCCgGg -3'
miRNA:   3'- aCCACAACUCgUCG--------------UCGUGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 50265 0.72 0.3712
Target:  5'- ------cGGGCGGCcgggcucGGCGCGCCCCCGg -3'
miRNA:   3'- accacaaCUCGUCG-------UCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 32513 0.72 0.372001
Target:  5'- aGGgGUaGAGCAgGUAGgGCGCCCCCc -3'
miRNA:   3'- aCCaCAaCUCGU-CGUCgUGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 518 0.72 0.396589
Target:  5'- cGGgcgccGggGGGCGGCGGCcggccGCGCCCCgGg -3'
miRNA:   3'- aCCa----CaaCUCGUCGUCG-----UGCGGGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.