miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 3' -59.5 NC_006560.1 + 518 0.72 0.396589
Target:  5'- cGGgcgccGggGGGCGGCGGCcggccGCGCCCCgGg -3'
miRNA:   3'- aCCa----CaaCUCGUCGUCG-----UGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 924 0.75 0.270229
Target:  5'- cGGUGgaggccuagggGAGCccGGCAGCccCGCCCCCGa -3'
miRNA:   3'- aCCACaa---------CUCG--UCGUCGu-GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 2771 0.75 0.271494
Target:  5'- cGcGUGgaGAGCAGgAGCACGCCCUg- -3'
miRNA:   3'- aC-CACaaCUCGUCgUCGUGCGGGGgc -5'
30997 3' -59.5 NC_006560.1 + 4033 0.7 0.495029
Target:  5'- cGGcGUcccgGGGCGGCGGCGCGgCgCCGg -3'
miRNA:   3'- aCCaCAa---CUCGUCGUCGUGCgGgGGC- -5'
30997 3' -59.5 NC_006560.1 + 5673 0.66 0.752179
Target:  5'- gGGgcgcggGGGCGGcCGGCgGCGCCgCCCGu -3'
miRNA:   3'- aCCacaa--CUCGUC-GUCG-UGCGG-GGGC- -5'
30997 3' -59.5 NC_006560.1 + 9264 0.66 0.761617
Target:  5'- aGGUGacGAggucGCGGCcccGGCGCGCCUCgGg -3'
miRNA:   3'- aCCACaaCU----CGUCG---UCGUGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 12768 0.68 0.643497
Target:  5'- ---aGUUGGGCGGCAGCugGgCCgagaCCGc -3'
miRNA:   3'- accaCAACUCGUCGUCGugCgGG----GGC- -5'
30997 3' -59.5 NC_006560.1 + 13358 0.68 0.643497
Target:  5'- cGGUGa--GGUuGUAGCGCGCgCCCGg -3'
miRNA:   3'- aCCACaacUCGuCGUCGUGCGgGGGC- -5'
30997 3' -59.5 NC_006560.1 + 14555 0.67 0.683722
Target:  5'- cGGgaggGGGCGGCGGCgcucACGCCUCgGa -3'
miRNA:   3'- aCCacaaCUCGUCGUCG----UGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 15070 0.71 0.448777
Target:  5'- cGGUGggGGGCGGgGGcuCugGCCCCUc -3'
miRNA:   3'- aCCACaaCUCGUCgUC--GugCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 15956 0.66 0.742637
Target:  5'- -cGUGUggGAGUacGGCcGCACGUgCCCGg -3'
miRNA:   3'- acCACAa-CUCG--UCGuCGUGCGgGGGC- -5'
30997 3' -59.5 NC_006560.1 + 16633 0.77 0.20879
Target:  5'- gGGUGUacgccGGGCGGCGguuGCGCGCCgCCCGg -3'
miRNA:   3'- aCCACAa----CUCGUCGU---CGUGCGG-GGGC- -5'
30997 3' -59.5 NC_006560.1 + 17702 0.74 0.318785
Target:  5'- gGGUcgUGGGCGGCGGCcggaaaaccgACGCCCCgGg -3'
miRNA:   3'- aCCAcaACUCGUCGUCG----------UGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 18559 0.68 0.602122
Target:  5'- gGGUGgucgGGGCGGCGgaccucuGCGCGCCguuCCUGg -3'
miRNA:   3'- aCCACaa--CUCGUCGU-------CGUGCGG---GGGC- -5'
30997 3' -59.5 NC_006560.1 + 19696 0.68 0.613207
Target:  5'- cUGGcGUcgGAGCGGUcGCACGCCaCgCCGu -3'
miRNA:   3'- -ACCaCAa-CUCGUCGuCGUGCGG-G-GGC- -5'
30997 3' -59.5 NC_006560.1 + 21266 0.76 0.224539
Target:  5'- cGGUGa-GGGCGGCGGCggcgcgGCGCCCUCGa -3'
miRNA:   3'- aCCACaaCUCGUCGUCG------UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 22158 0.71 0.439813
Target:  5'- aUGGUGgagGAGaCGGCccgGGCGCuGUCCCCGc -3'
miRNA:   3'- -ACCACaa-CUC-GUCG---UCGUG-CGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 22351 0.66 0.752179
Target:  5'- cGGcgGggGAGgaggacgaCGGCGGCGacgggcacccCGCCCCCGg -3'
miRNA:   3'- aCCa-CaaCUC--------GUCGUCGU----------GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 26145 0.71 0.467
Target:  5'- cUGcGUGggGGcGCGGCAGgGgcccCGCCCCCGg -3'
miRNA:   3'- -AC-CACaaCU-CGUCGUCgU----GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 26387 0.76 0.213931
Target:  5'- cGGccGggGcGCAGgGGCGCGCCCCCGg -3'
miRNA:   3'- aCCa-CaaCuCGUCgUCGUGCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.