miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 3' -59.5 NC_006560.1 + 150209 0.69 0.563091
Target:  5'- gGGUGgcGAGCGcGCGG-ACGCUgCCGg -3'
miRNA:   3'- aCCACaaCUCGU-CGUCgUGCGGgGGC- -5'
30997 3' -59.5 NC_006560.1 + 149363 0.72 0.413551
Target:  5'- cGGggagGAGCcgGGCGGCGcCGCCCCCc -3'
miRNA:   3'- aCCacaaCUCG--UCGUCGU-GCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 149094 0.66 0.761617
Target:  5'- cGGgGgcGGGCGcCGGgGCGUCCCCGu -3'
miRNA:   3'- aCCaCaaCUCGUcGUCgUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 146832 0.66 0.761617
Target:  5'- gGGUGUgggcgugcuGCGGCGGCGCggggcggggcgGCgCCCGg -3'
miRNA:   3'- aCCACAacu------CGUCGUCGUG-----------CGgGGGC- -5'
30997 3' -59.5 NC_006560.1 + 144131 0.69 0.583041
Target:  5'- cGGcGgcc-GCGGCGGCGCcCCCCCGg -3'
miRNA:   3'- aCCaCaacuCGUCGUCGUGcGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 143466 0.69 0.533531
Target:  5'- aGGUGUcuucgcagaagUGGGCGGgcgccCGGCGuccccCGCCCCCGu -3'
miRNA:   3'- aCCACA-----------ACUCGUC-----GUCGU-----GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 142674 0.73 0.326025
Target:  5'- gGGUGagGGGCGGCGGCggaccggaggggGCGCCCggCCGg -3'
miRNA:   3'- aCCACaaCUCGUCGUCG------------UGCGGG--GGC- -5'
30997 3' -59.5 NC_006560.1 + 139875 1.08 0.001497
Target:  5'- gUGGUGUUGAGCAGCAGCACGCCCCCGc -3'
miRNA:   3'- -ACCACAACUCGUCGUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 136931 0.67 0.703619
Target:  5'- cUGGUGUUcGGCuucGGCGGCAC-CUUCCGc -3'
miRNA:   3'- -ACCACAAcUCG---UCGUCGUGcGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 133961 0.69 0.583041
Target:  5'- gGGUcGUcggGGGCcGCGGCGCcccCCCCCGg -3'
miRNA:   3'- aCCA-CAa--CUCGuCGUCGUGc--GGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 133790 0.67 0.653586
Target:  5'- uUGGUGUggcgcgagaucuUGAagcagcGCAGCAGCucgUGCUCCCa -3'
miRNA:   3'- -ACCACA------------ACU------CGUCGUCGu--GCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 133694 0.68 0.603129
Target:  5'- cGG-GaUGGGCGcgcGCAGCACGUCCgCGa -3'
miRNA:   3'- aCCaCaACUCGU---CGUCGUGCGGGgGC- -5'
30997 3' -59.5 NC_006560.1 + 133136 0.67 0.673707
Target:  5'- cGGUGggcggccUGGccGCGGCAGCGCGCgaaguaguCCUCGg -3'
miRNA:   3'- aCCACa------ACU--CGUCGUCGUGCG--------GGGGC- -5'
30997 3' -59.5 NC_006560.1 + 131389 0.68 0.6233
Target:  5'- cGGUGcUG-GCgGGCGcuggccgcggacGCGCGCCCCUGg -3'
miRNA:   3'- aCCACaACuCG-UCGU------------CGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 131164 0.66 0.733001
Target:  5'- cGGcucUGGGCGGCGGC-CGCCgcgggggcgCCCGg -3'
miRNA:   3'- aCCacaACUCGUCGUCGuGCGG---------GGGC- -5'
30997 3' -59.5 NC_006560.1 + 130412 0.69 0.543328
Target:  5'- cUGGcGgcccugGAGCgcgaggugGGCGGCGCGCCCCUc -3'
miRNA:   3'- -ACCaCaa----CUCG--------UCGUCGUGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 130317 0.68 0.643497
Target:  5'- cGGU----GGCGGCGGCGCGggccgcggcguCCCCCGc -3'
miRNA:   3'- aCCAcaacUCGUCGUCGUGC-----------GGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 127401 0.66 0.7125
Target:  5'- cGGcGaUGAGCAGCcccaggagacagAGCacggagacgacgaACGCCCCCa -3'
miRNA:   3'- aCCaCaACUCGUCG------------UCG-------------UGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 127292 0.83 0.075126
Target:  5'- aGGUGcgGGGguGCGGcCACGCCCCCGc -3'
miRNA:   3'- aCCACaaCUCguCGUC-GUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 127089 0.66 0.709545
Target:  5'- cGGUGaccuGCAGCAGCcagaggcaggcguUGCCCCCc -3'
miRNA:   3'- aCCACaacuCGUCGUCGu------------GCGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.