miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30998 5' -58 NC_006560.1 + 93685 0.67 0.765316
Target:  5'- -gGCgGACGAcgccGCGGUCUCggAGCCGAc -3'
miRNA:   3'- gaCGgCUGCUu---CGCUAGGG--UCGGCUa -5'
30998 5' -58 NC_006560.1 + 62491 0.67 0.765316
Target:  5'- gUGCaGACGAGGUugucGUCCCcGCCGAa -3'
miRNA:   3'- gACGgCUGCUUCGc---UAGGGuCGGCUa -5'
30998 5' -58 NC_006560.1 + 4168 0.67 0.765316
Target:  5'- -cGgCGGCGgcGUGGgccaggcCCCAGCCGAa -3'
miRNA:   3'- gaCgGCUGCuuCGCUa------GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 78890 0.67 0.764376
Target:  5'- cCUGCUGcGCGAGGCGuUCCCGGgggcgcccgcguaCCGGc -3'
miRNA:   3'- -GACGGC-UGCUUCGCuAGGGUC-------------GGCUa -5'
30998 5' -58 NC_006560.1 + 50945 0.67 0.764376
Target:  5'- cCUGCUGGCGAcccggggacucgcGGCGc-CCCAGaCCGGg -3'
miRNA:   3'- -GACGGCUGCU-------------UCGCuaGGGUC-GGCUa -5'
30998 5' -58 NC_006560.1 + 142688 0.67 0.755861
Target:  5'- -gGCgGAcCGGAGgGGgcgCCCGGCCGGc -3'
miRNA:   3'- gaCGgCU-GCUUCgCUa--GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 89022 0.67 0.755861
Target:  5'- uCUGUgGGCGggGCGcGUCcCCGGUCGc- -3'
miRNA:   3'- -GACGgCUGCuuCGC-UAG-GGUCGGCua -5'
30998 5' -58 NC_006560.1 + 117719 0.67 0.755861
Target:  5'- cCUGCgGuccCGggGCGG-CCCGGCCu-- -3'
miRNA:   3'- -GACGgCu--GCuuCGCUaGGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 15199 0.67 0.754909
Target:  5'- cCU-CCGGCGggGCGGgacucguUCCCGccccGCCGGUc -3'
miRNA:   3'- -GAcGGCUGCuuCGCU-------AGGGU----CGGCUA- -5'
30998 5' -58 NC_006560.1 + 127692 0.67 0.750135
Target:  5'- -cGCCGACGucgcggugcgugacGGUGGUCCgCGcGCCGAUg -3'
miRNA:   3'- gaCGGCUGCu-------------UCGCUAGG-GU-CGGCUA- -5'
30998 5' -58 NC_006560.1 + 58251 0.67 0.746297
Target:  5'- -gGCCGcCGAGGCGAgccgCCGGCCu-- -3'
miRNA:   3'- gaCGGCuGCUUCGCUag--GGUCGGcua -5'
30998 5' -58 NC_006560.1 + 64244 0.67 0.746297
Target:  5'- -aGCC-ACGAGGC-AUCgCGGCCGAa -3'
miRNA:   3'- gaCGGcUGCUUCGcUAGgGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 64958 0.67 0.745335
Target:  5'- -cGCCGGCGGccucgucccccucGGCGGggCCGGCCGc- -3'
miRNA:   3'- gaCGGCUGCU-------------UCGCUagGGUCGGCua -5'
30998 5' -58 NC_006560.1 + 57668 0.68 0.726884
Target:  5'- -gGgCGGCGAGGCGcgCCC-GCCGc- -3'
miRNA:   3'- gaCgGCUGCUUCGCuaGGGuCGGCua -5'
30998 5' -58 NC_006560.1 + 60977 0.68 0.717052
Target:  5'- -gGCCGugGAcuGGC--UCCCcgAGCCGAUg -3'
miRNA:   3'- gaCGGCugCU--UCGcuAGGG--UCGGCUA- -5'
30998 5' -58 NC_006560.1 + 67173 0.68 0.717052
Target:  5'- -cGCCGGCGAcccgAGCGAgCCCGGaggcagaCGAg -3'
miRNA:   3'- gaCGGCUGCU----UCGCUaGGGUCg------GCUa -5'
30998 5' -58 NC_006560.1 + 133413 0.68 0.717052
Target:  5'- -cGCCGGagcuCGggGCGGccauggucgcCCCGGCCGAc -3'
miRNA:   3'- gaCGGCU----GCuuCGCUa---------GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 150471 0.68 0.707148
Target:  5'- -gGCCGGCcccgccccGCGGUCCCGGCCc-- -3'
miRNA:   3'- gaCGGCUGcuu-----CGCUAGGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 7644 0.68 0.707148
Target:  5'- -gGCCGuCGggGCGAccgucgccccUCUgGGCCGGc -3'
miRNA:   3'- gaCGGCuGCuuCGCU----------AGGgUCGGCUa -5'
30998 5' -58 NC_006560.1 + 142 0.68 0.707148
Target:  5'- -gGCCGGCcccgccccGCGGUCCCGGCCc-- -3'
miRNA:   3'- gaCGGCUGcuu-----CGCUAGGGUCGGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.