miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30998 5' -58 NC_006560.1 + 142977 0.66 0.819291
Target:  5'- -cGCCG-CGGcgAGCGAccCCCGGcCCGAg -3'
miRNA:   3'- gaCGGCuGCU--UCGCUa-GGGUC-GGCUa -5'
30998 5' -58 NC_006560.1 + 30093 0.66 0.819291
Target:  5'- --cCCGGgGAGGCGGcCCCGGCCu-- -3'
miRNA:   3'- gacGGCUgCUUCGCUaGGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 109137 0.66 0.818436
Target:  5'- gUGCCccgGACGAccagcccaaacuuGGCGAUCUC-GCCGGg -3'
miRNA:   3'- gACGG---CUGCU-------------UCGCUAGGGuCGGCUa -5'
30998 5' -58 NC_006560.1 + 33494 0.66 0.810666
Target:  5'- -cGCCGGCaggGAGGCGggCgCCGGcCCGGg -3'
miRNA:   3'- gaCGGCUG---CUUCGCuaG-GGUC-GGCUa -5'
30998 5' -58 NC_006560.1 + 76364 0.66 0.810666
Target:  5'- cCUGCggGugGcGGCGAUCCCGG-CGAc -3'
miRNA:   3'- -GACGg-CugCuUCGCUAGGGUCgGCUa -5'
30998 5' -58 NC_006560.1 + 105416 0.66 0.810666
Target:  5'- -cGCCGACGccAGGCugccCCCGGCCGc- -3'
miRNA:   3'- gaCGGCUGC--UUCGcua-GGGUCGGCua -5'
30998 5' -58 NC_006560.1 + 20073 0.66 0.810666
Target:  5'- --uCCGACgGggGCGGcUCCguGCCGGg -3'
miRNA:   3'- gacGGCUG-CuuCGCU-AGGguCGGCUa -5'
30998 5' -58 NC_006560.1 + 72924 0.66 0.810666
Target:  5'- -cGCCGGCccccGGAgccccccgccuGCGA-CCCGGCCGAg -3'
miRNA:   3'- gaCGGCUG----CUU-----------CGCUaGGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 33567 0.66 0.801882
Target:  5'- -aGCCGGgGggGCGccgCCgCGGCCGc- -3'
miRNA:   3'- gaCGGCUgCuuCGCua-GG-GUCGGCua -5'
30998 5' -58 NC_006560.1 + 74476 0.66 0.801882
Target:  5'- cCUGCUGGCgGAGGCGcgCgCGcgcGCCGAg -3'
miRNA:   3'- -GACGGCUG-CUUCGCuaGgGU---CGGCUa -5'
30998 5' -58 NC_006560.1 + 106731 0.66 0.801882
Target:  5'- cCU-CCGACGuGGCGGUggccaCCCAcGCCGAc -3'
miRNA:   3'- -GAcGGCUGCuUCGCUA-----GGGU-CGGCUa -5'
30998 5' -58 NC_006560.1 + 26362 0.66 0.792946
Target:  5'- -aGaCGGCGggGCGGagacggcgcCCCGGCCGGg -3'
miRNA:   3'- gaCgGCUGCuuCGCUa--------GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 51994 0.66 0.792946
Target:  5'- cCUGCCGGCGcGGUGAccgccgCCCcGCCa-- -3'
miRNA:   3'- -GACGGCUGCuUCGCUa-----GGGuCGGcua -5'
30998 5' -58 NC_006560.1 + 88890 0.66 0.792946
Target:  5'- -gGCCgGGCGAGGgccgGGUCgCCGGCCGGc -3'
miRNA:   3'- gaCGG-CUGCUUCg---CUAG-GGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 75369 0.66 0.792946
Target:  5'- -cGCCGACGAgcuggaGGCGG-CCgCcGCCGAc -3'
miRNA:   3'- gaCGGCUGCU------UCGCUaGG-GuCGGCUa -5'
30998 5' -58 NC_006560.1 + 81636 0.66 0.792946
Target:  5'- aUGCgGACGAAGCagugGAUCCaCAuGCUGGc -3'
miRNA:   3'- gACGgCUGCUUCG----CUAGG-GU-CGGCUa -5'
30998 5' -58 NC_006560.1 + 86885 0.66 0.792946
Target:  5'- -cGCCGGCGGucGCGuccUCCgGGCCGc- -3'
miRNA:   3'- gaCGGCUGCUu-CGCu--AGGgUCGGCua -5'
30998 5' -58 NC_006560.1 + 94610 0.66 0.792946
Target:  5'- aUGCCGucaGCGAGcuGCGGUUCUGGCUGGc -3'
miRNA:   3'- gACGGC---UGCUU--CGCUAGGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 13255 0.67 0.783868
Target:  5'- uUGCgGACGggGCacucgCCCaggGGCCGGUc -3'
miRNA:   3'- gACGgCUGCuuCGcua--GGG---UCGGCUA- -5'
30998 5' -58 NC_006560.1 + 131048 0.67 0.774655
Target:  5'- -gGCCGACGcugaaGGUCCCGGCgGGc -3'
miRNA:   3'- gaCGGCUGCuucg-CUAGGGUCGgCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.