miRNA display CGI


Results 21 - 40 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30998 5' -58 NC_006560.1 + 21704 0.69 0.64367
Target:  5'- -cGCCGGCcgcccccgcgccccGggGCGGagCCGGCCGGg -3'
miRNA:   3'- gaCGGCUG--------------CuuCGCUagGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 92374 0.69 0.646717
Target:  5'- uCUGCgCGGCGgcGCGG-CCCuggaGGCCGGg -3'
miRNA:   3'- -GACG-GCUGCuuCGCUaGGG----UCGGCUa -5'
30998 5' -58 NC_006560.1 + 122462 0.69 0.652808
Target:  5'- -gGCCGGCGGucuuccgggaGGCGGggcacccgcucccCCCAGCCGGg -3'
miRNA:   3'- gaCGGCUGCU----------UCGCUa------------GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 73175 0.69 0.656866
Target:  5'- -cGCCGGCGcggGGGCGGagggCCCGGCCu-- -3'
miRNA:   3'- gaCGGCUGC---UUCGCUa---GGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 53400 0.69 0.666995
Target:  5'- gCUGgCGACGGAGCucUUCCGGaCCGGg -3'
miRNA:   3'- -GACgGCUGCUUCGcuAGGGUC-GGCUa -5'
30998 5' -58 NC_006560.1 + 139067 0.68 0.677097
Target:  5'- gUGCCGGgcccgGggGCGcgCCCuGCCGGc -3'
miRNA:   3'- gACGGCUg----CuuCGCuaGGGuCGGCUa -5'
30998 5' -58 NC_006560.1 + 128306 0.68 0.677097
Target:  5'- -cGCCcGCGggGCG-UCCCcccggGGCCGGg -3'
miRNA:   3'- gaCGGcUGCuuCGCuAGGG-----UCGGCUa -5'
30998 5' -58 NC_006560.1 + 140026 0.68 0.681128
Target:  5'- -gGCCGugGGccuGGCcgggcuggugauaggGGUCCUGGCCGAUg -3'
miRNA:   3'- gaCGGCugCU---UCG---------------CUAGGGUCGGCUA- -5'
30998 5' -58 NC_006560.1 + 125040 0.68 0.687162
Target:  5'- gCUGgUGGCGcGGCGGUCgCCGGCgGAc -3'
miRNA:   3'- -GACgGCUGCuUCGCUAG-GGUCGgCUa -5'
30998 5' -58 NC_006560.1 + 15802 0.68 0.687162
Target:  5'- -cGCCGGCG--GCGA-CCgCGGCCGAc -3'
miRNA:   3'- gaCGGCUGCuuCGCUaGG-GUCGGCUa -5'
30998 5' -58 NC_006560.1 + 79021 0.68 0.697182
Target:  5'- -gGCCGGCGccGGCGAuccUCCCGGaCGAg -3'
miRNA:   3'- gaCGGCUGCu-UCGCU---AGGGUCgGCUa -5'
30998 5' -58 NC_006560.1 + 134741 0.68 0.697182
Target:  5'- -aGUCGGCGAuGCGcgCCgAGUCGAa -3'
miRNA:   3'- gaCGGCUGCUuCGCuaGGgUCGGCUa -5'
30998 5' -58 NC_006560.1 + 40085 0.68 0.697182
Target:  5'- gUGCgGugGggGCGGggcgCCCGggccGCCGGg -3'
miRNA:   3'- gACGgCugCuuCGCUa---GGGU----CGGCUa -5'
30998 5' -58 NC_006560.1 + 89701 0.68 0.697182
Target:  5'- -cGCCGACGcGGCGGUCgC-GCCGc- -3'
miRNA:   3'- gaCGGCUGCuUCGCUAGgGuCGGCua -5'
30998 5' -58 NC_006560.1 + 7644 0.68 0.707148
Target:  5'- -gGCCGuCGggGCGAccgucgccccUCUgGGCCGGc -3'
miRNA:   3'- gaCGGCuGCuuCGCU----------AGGgUCGGCUa -5'
30998 5' -58 NC_006560.1 + 150471 0.68 0.707148
Target:  5'- -gGCCGGCcccgccccGCGGUCCCGGCCc-- -3'
miRNA:   3'- gaCGGCUGcuu-----CGCUAGGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 142 0.68 0.707148
Target:  5'- -gGCCGGCcccgccccGCGGUCCCGGCCc-- -3'
miRNA:   3'- gaCGGCUGcuu-----CGCUAGGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 133413 0.68 0.717052
Target:  5'- -cGCCGGagcuCGggGCGGccauggucgcCCCGGCCGAc -3'
miRNA:   3'- gaCGGCU----GCuuCGCUa---------GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 67173 0.68 0.717052
Target:  5'- -cGCCGGCGAcccgAGCGAgCCCGGaggcagaCGAg -3'
miRNA:   3'- gaCGGCUGCU----UCGCUaGGGUCg------GCUa -5'
30998 5' -58 NC_006560.1 + 60977 0.68 0.717052
Target:  5'- -gGCCGugGAcuGGC--UCCCcgAGCCGAUg -3'
miRNA:   3'- gaCGGCugCU--UCGcuAGGG--UCGGCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.