miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30998 5' -58 NC_006560.1 + 139808 1.05 0.003317
Target:  5'- gCUGCCGACGAAGCGAUCCCAGCCGAUc -3'
miRNA:   3'- -GACGGCUGCUUCGCUAGGGUCGGCUA- -5'
30998 5' -58 NC_006560.1 + 5637 0.79 0.17987
Target:  5'- -gGCCGGCGAcgGGCGGcgCCCGGCCGGc -3'
miRNA:   3'- gaCGGCUGCU--UCGCUa-GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 116736 0.76 0.305213
Target:  5'- -gGCCGACGGccGCGAUCCCGGuccCCGAg -3'
miRNA:   3'- gaCGGCUGCUu-CGCUAGGGUC---GGCUa -5'
30998 5' -58 NC_006560.1 + 87049 0.75 0.349365
Target:  5'- aUGCCGGCGAGcCGggCCaCGGCCGAg -3'
miRNA:   3'- gACGGCUGCUUcGCuaGG-GUCGGCUa -5'
30998 5' -58 NC_006560.1 + 102002 0.74 0.373088
Target:  5'- -aGCCGGgGggGCGGUCCUccGCCGGa -3'
miRNA:   3'- gaCGGCUgCuuCGCUAGGGu-CGGCUa -5'
30998 5' -58 NC_006560.1 + 54156 0.72 0.478222
Target:  5'- --aCCGGCGAGGCGAaCCUGGCCGc- -3'
miRNA:   3'- gacGGCUGCUUCGCUaGGGUCGGCua -5'
30998 5' -58 NC_006560.1 + 88758 0.71 0.535968
Target:  5'- -gGCCGGgGggGCGGcgcggaccCCCGGCCGGc -3'
miRNA:   3'- gaCGGCUgCuuCGCUa-------GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 125184 0.71 0.545842
Target:  5'- -gGCCGGCGGcgaaaagaGGCGGUgCCCGGCCc-- -3'
miRNA:   3'- gaCGGCUGCU--------UCGCUA-GGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 20848 0.71 0.555774
Target:  5'- -aGCCccCGAGGCGAUCCCGGgaCGAc -3'
miRNA:   3'- gaCGGcuGCUUCGCUAGGGUCg-GCUa -5'
30998 5' -58 NC_006560.1 + 52638 0.7 0.565758
Target:  5'- -cGCCgGGCGAgGGCGAcCCCAGCCu-- -3'
miRNA:   3'- gaCGG-CUGCU-UCGCUaGGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 123053 0.7 0.565758
Target:  5'- -cGCgCGGCGAgcacccccuGGUGAUCCCGGCCc-- -3'
miRNA:   3'- gaCG-GCUGCU---------UCGCUAGGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 3563 0.7 0.575787
Target:  5'- -cGCCGACGGAGCGca-CCuGCCGc- -3'
miRNA:   3'- gaCGGCUGCUUCGCuagGGuCGGCua -5'
30998 5' -58 NC_006560.1 + 90985 0.7 0.575787
Target:  5'- gCUGCgaCGGCGggGUGAUCgUCGGCCGc- -3'
miRNA:   3'- -GACG--GCUGCuuCGCUAG-GGUCGGCua -5'
30998 5' -58 NC_006560.1 + 115101 0.7 0.575787
Target:  5'- uCUGCCGACGAuccGGCGGcagcuggCgCUGGCCGAc -3'
miRNA:   3'- -GACGGCUGCU---UCGCUa------G-GGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 75060 0.7 0.606087
Target:  5'- -cGCCGGCuacGAGCGAgcgaCCCGGCUGGc -3'
miRNA:   3'- gaCGGCUGc--UUCGCUa---GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 20892 0.7 0.606087
Target:  5'- -cGUCGGCGcGGCGuUCCCGGgCGGUg -3'
miRNA:   3'- gaCGGCUGCuUCGCuAGGGUCgGCUA- -5'
30998 5' -58 NC_006560.1 + 73286 0.7 0.620297
Target:  5'- -cGCCGACGuGGCGG-CCCacgucccgcucauccAGCCGGUc -3'
miRNA:   3'- gaCGGCUGCuUCGCUaGGG---------------UCGGCUA- -5'
30998 5' -58 NC_006560.1 + 77937 0.69 0.636557
Target:  5'- cCUGCCc-----GCGGUCCCGGCCGGg -3'
miRNA:   3'- -GACGGcugcuuCGCUAGGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 124005 0.69 0.636557
Target:  5'- -gGCCucCGAAGCGGcCCCGGcCCGAc -3'
miRNA:   3'- gaCGGcuGCUUCGCUaGGGUC-GGCUa -5'
30998 5' -58 NC_006560.1 + 127589 0.69 0.636557
Target:  5'- aUGCUGuACgGggGCGA-CCUGGCCGAg -3'
miRNA:   3'- gACGGC-UG-CuuCGCUaGGGUCGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.