miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30998 5' -58 NC_006560.1 + 142 0.68 0.707148
Target:  5'- -gGCCGGCcccgccccGCGGUCCCGGCCc-- -3'
miRNA:   3'- gaCGGCUGcuu-----CGCUAGGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 3563 0.7 0.575787
Target:  5'- -cGCCGACGGAGCGca-CCuGCCGc- -3'
miRNA:   3'- gaCGGCUGCUUCGCuagGGuCGGCua -5'
30998 5' -58 NC_006560.1 + 4168 0.67 0.765316
Target:  5'- -cGgCGGCGgcGUGGgccaggcCCCAGCCGAa -3'
miRNA:   3'- gaCgGCUGCuuCGCUa------GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 5637 0.79 0.17987
Target:  5'- -gGCCGGCGAcgGGCGGcgCCCGGCCGGc -3'
miRNA:   3'- gaCGGCUGCU--UCGCUa-GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 7644 0.68 0.707148
Target:  5'- -gGCCGuCGggGCGAccgucgccccUCUgGGCCGGc -3'
miRNA:   3'- gaCGGCuGCuuCGCU----------AGGgUCGGCUa -5'
30998 5' -58 NC_006560.1 + 11904 0.66 0.827747
Target:  5'- -gGCCGACGAcGGCG-UCCgcgaAGCCGc- -3'
miRNA:   3'- gaCGGCUGCU-UCGCuAGGg---UCGGCua -5'
30998 5' -58 NC_006560.1 + 13255 0.67 0.783868
Target:  5'- uUGCgGACGggGCacucgCCCaggGGCCGGUc -3'
miRNA:   3'- gACGgCUGCuuCGcua--GGG---UCGGCUA- -5'
30998 5' -58 NC_006560.1 + 14869 0.66 0.827747
Target:  5'- -cGCCGGgGggGCGGggagaggucguUCCCGGgcCCGGg -3'
miRNA:   3'- gaCGGCUgCuuCGCU-----------AGGGUC--GGCUa -5'
30998 5' -58 NC_006560.1 + 15199 0.67 0.754909
Target:  5'- cCU-CCGGCGggGCGGgacucguUCCCGccccGCCGGUc -3'
miRNA:   3'- -GAcGGCUGCuuCGCU-------AGGGU----CGGCUA- -5'
30998 5' -58 NC_006560.1 + 15802 0.68 0.687162
Target:  5'- -cGCCGGCG--GCGA-CCgCGGCCGAc -3'
miRNA:   3'- gaCGGCUGCuuCGCUaGG-GUCGGCUa -5'
30998 5' -58 NC_006560.1 + 20073 0.66 0.810666
Target:  5'- --uCCGACgGggGCGGcUCCguGCCGGg -3'
miRNA:   3'- gacGGCUG-CuuCGCU-AGGguCGGCUa -5'
30998 5' -58 NC_006560.1 + 20848 0.71 0.555774
Target:  5'- -aGCCccCGAGGCGAUCCCGGgaCGAc -3'
miRNA:   3'- gaCGGcuGCUUCGCUAGGGUCg-GCUa -5'
30998 5' -58 NC_006560.1 + 20892 0.7 0.606087
Target:  5'- -cGUCGGCGcGGCGuUCCCGGgCGGUg -3'
miRNA:   3'- gaCGGCUGCuUCGCuAGGGUCgGCUA- -5'
30998 5' -58 NC_006560.1 + 21704 0.69 0.64367
Target:  5'- -cGCCGGCcgcccccgcgccccGggGCGGagCCGGCCGGg -3'
miRNA:   3'- gaCGGCUG--------------CuuCGCUagGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 23305 0.66 0.819291
Target:  5'- cCUGCUGGCGc-GCGAgaacgccgCCgCGGCCGGc -3'
miRNA:   3'- -GACGGCUGCuuCGCUa-------GG-GUCGGCUa -5'
30998 5' -58 NC_006560.1 + 23596 0.66 0.827747
Target:  5'- -gGCCGcgcGCGccGCGGUCCC-GCCGc- -3'
miRNA:   3'- gaCGGC---UGCuuCGCUAGGGuCGGCua -5'
30998 5' -58 NC_006560.1 + 26362 0.66 0.792946
Target:  5'- -aGaCGGCGggGCGGagacggcgcCCCGGCCGGg -3'
miRNA:   3'- gaCgGCUGCuuCGCUa--------GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 29068 0.66 0.827747
Target:  5'- -gGCCGGCGggGCccgCCC-GUCGGg -3'
miRNA:   3'- gaCGGCUGCuuCGcuaGGGuCGGCUa -5'
30998 5' -58 NC_006560.1 + 30035 0.66 0.819291
Target:  5'- -gGCCGAgGAGGCGGUgCgC-GCCGGc -3'
miRNA:   3'- gaCGGCUgCUUCGCUAgG-GuCGGCUa -5'
30998 5' -58 NC_006560.1 + 30093 0.66 0.819291
Target:  5'- --cCCGGgGAGGCGGcCCCGGCCu-- -3'
miRNA:   3'- gacGGCUgCUUCGCUaGGGUCGGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.