miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30998 5' -58 NC_006560.1 + 33494 0.66 0.810666
Target:  5'- -cGCCGGCaggGAGGCGggCgCCGGcCCGGg -3'
miRNA:   3'- gaCGGCUG---CUUCGCuaG-GGUC-GGCUa -5'
30998 5' -58 NC_006560.1 + 33567 0.66 0.801882
Target:  5'- -aGCCGGgGggGCGccgCCgCGGCCGc- -3'
miRNA:   3'- gaCGGCUgCuuCGCua-GG-GUCGGCua -5'
30998 5' -58 NC_006560.1 + 35145 0.66 0.836029
Target:  5'- -gGCCGGCGGcccGCGuccgacgcgCCCGGCCGc- -3'
miRNA:   3'- gaCGGCUGCUu--CGCua-------GGGUCGGCua -5'
30998 5' -58 NC_006560.1 + 40085 0.68 0.697182
Target:  5'- gUGCgGugGggGCGGggcgCCCGggccGCCGGg -3'
miRNA:   3'- gACGgCugCuuCGCUa---GGGU----CGGCUa -5'
30998 5' -58 NC_006560.1 + 50945 0.67 0.764376
Target:  5'- cCUGCUGGCGAcccggggacucgcGGCGc-CCCAGaCCGGg -3'
miRNA:   3'- -GACGGCUGCU-------------UCGCuaGGGUC-GGCUa -5'
30998 5' -58 NC_006560.1 + 51994 0.66 0.792946
Target:  5'- cCUGCCGGCGcGGUGAccgccgCCCcGCCa-- -3'
miRNA:   3'- -GACGGCUGCuUCGCUa-----GGGuCGGcua -5'
30998 5' -58 NC_006560.1 + 52638 0.7 0.565758
Target:  5'- -cGCCgGGCGAgGGCGAcCCCAGCCu-- -3'
miRNA:   3'- gaCGG-CUGCU-UCGCUaGGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 53400 0.69 0.666995
Target:  5'- gCUGgCGACGGAGCucUUCCGGaCCGGg -3'
miRNA:   3'- -GACgGCUGCUUCGcuAGGGUC-GGCUa -5'
30998 5' -58 NC_006560.1 + 54156 0.72 0.478222
Target:  5'- --aCCGGCGAGGCGAaCCUGGCCGc- -3'
miRNA:   3'- gacGGCUGCUUCGCUaGGGUCGGCua -5'
30998 5' -58 NC_006560.1 + 57348 0.66 0.836029
Target:  5'- -gGCCGcgGCGAAGCGGcCUCGGgCGGa -3'
miRNA:   3'- gaCGGC--UGCUUCGCUaGGGUCgGCUa -5'
30998 5' -58 NC_006560.1 + 57668 0.68 0.726884
Target:  5'- -gGgCGGCGAGGCGcgCCC-GCCGc- -3'
miRNA:   3'- gaCgGCUGCUUCGCuaGGGuCGGCua -5'
30998 5' -58 NC_006560.1 + 58251 0.67 0.746297
Target:  5'- -gGCCGcCGAGGCGAgccgCCGGCCu-- -3'
miRNA:   3'- gaCGGCuGCUUCGCUag--GGUCGGcua -5'
30998 5' -58 NC_006560.1 + 60977 0.68 0.717052
Target:  5'- -gGCCGugGAcuGGC--UCCCcgAGCCGAUg -3'
miRNA:   3'- gaCGGCugCU--UCGcuAGGG--UCGGCUA- -5'
30998 5' -58 NC_006560.1 + 62491 0.67 0.765316
Target:  5'- gUGCaGACGAGGUugucGUCCCcGCCGAa -3'
miRNA:   3'- gACGgCUGCUUCGc---UAGGGuCGGCUa -5'
30998 5' -58 NC_006560.1 + 64244 0.67 0.746297
Target:  5'- -aGCC-ACGAGGC-AUCgCGGCCGAa -3'
miRNA:   3'- gaCGGcUGCUUCGcUAGgGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 64958 0.67 0.745335
Target:  5'- -cGCCGGCGGccucgucccccucGGCGGggCCGGCCGc- -3'
miRNA:   3'- gaCGGCUGCU-------------UCGCUagGGUCGGCua -5'
30998 5' -58 NC_006560.1 + 67173 0.68 0.717052
Target:  5'- -cGCCGGCGAcccgAGCGAgCCCGGaggcagaCGAg -3'
miRNA:   3'- gaCGGCUGCU----UCGCUaGGGUCg------GCUa -5'
30998 5' -58 NC_006560.1 + 72088 0.66 0.819291
Target:  5'- -gGCCc-CGAgccGGCGAcCCCGGCCGGc -3'
miRNA:   3'- gaCGGcuGCU---UCGCUaGGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 72924 0.66 0.810666
Target:  5'- -cGCCGGCccccGGAgccccccgccuGCGA-CCCGGCCGAg -3'
miRNA:   3'- gaCGGCUG----CUU-----------CGCUaGGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 73175 0.69 0.656866
Target:  5'- -cGCCGGCGcggGGGCGGagggCCCGGCCu-- -3'
miRNA:   3'- gaCGGCUGC---UUCGCUa---GGGUCGGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.