miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30998 5' -58 NC_006560.1 + 150471 0.68 0.707148
Target:  5'- -gGCCGGCcccgccccGCGGUCCCGGCCc-- -3'
miRNA:   3'- gaCGGCUGcuu-----CGCUAGGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 148427 0.66 0.827747
Target:  5'- -gGCCGGCGAGGaggaGAgagaaCCCgggcgGGCCGAc -3'
miRNA:   3'- gaCGGCUGCUUCg---CUa----GGG-----UCGGCUa -5'
30998 5' -58 NC_006560.1 + 147991 0.66 0.827747
Target:  5'- -cGUCGgagGCGggGCGGUCgCGGCCc-- -3'
miRNA:   3'- gaCGGC---UGCuuCGCUAGgGUCGGcua -5'
30998 5' -58 NC_006560.1 + 142977 0.66 0.819291
Target:  5'- -cGCCG-CGGcgAGCGAccCCCGGcCCGAg -3'
miRNA:   3'- gaCGGCuGCU--UCGCUa-GGGUC-GGCUa -5'
30998 5' -58 NC_006560.1 + 142688 0.67 0.755861
Target:  5'- -gGCgGAcCGGAGgGGgcgCCCGGCCGGc -3'
miRNA:   3'- gaCGgCU-GCUUCgCUa--GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 140874 0.66 0.819291
Target:  5'- aUGCCGuCGAuGCGcgCgUAGUCGAUg -3'
miRNA:   3'- gACGGCuGCUuCGCuaGgGUCGGCUA- -5'
30998 5' -58 NC_006560.1 + 140026 0.68 0.681128
Target:  5'- -gGCCGugGGccuGGCcgggcuggugauaggGGUCCUGGCCGAUg -3'
miRNA:   3'- gaCGGCugCU---UCG---------------CUAGGGUCGGCUA- -5'
30998 5' -58 NC_006560.1 + 139808 1.05 0.003317
Target:  5'- gCUGCCGACGAAGCGAUCCCAGCCGAUc -3'
miRNA:   3'- -GACGGCUGCUUCGCUAGGGUCGGCUA- -5'
30998 5' -58 NC_006560.1 + 139067 0.68 0.677097
Target:  5'- gUGCCGGgcccgGggGCGcgCCCuGCCGGc -3'
miRNA:   3'- gACGGCUg----CuuCGCuaGGGuCGGCUa -5'
30998 5' -58 NC_006560.1 + 135124 0.66 0.827747
Target:  5'- -aGCCGGCG-GGCGG-CCacguGCCGGUg -3'
miRNA:   3'- gaCGGCUGCuUCGCUaGGgu--CGGCUA- -5'
30998 5' -58 NC_006560.1 + 134741 0.68 0.697182
Target:  5'- -aGUCGGCGAuGCGcgCCgAGUCGAa -3'
miRNA:   3'- gaCGGCUGCUuCGCuaGGgUCGGCUa -5'
30998 5' -58 NC_006560.1 + 133413 0.68 0.717052
Target:  5'- -cGCCGGagcuCGggGCGGccauggucgcCCCGGCCGAc -3'
miRNA:   3'- gaCGGCU----GCuuCGCUa---------GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 133200 0.66 0.819291
Target:  5'- -gGCCGcCGuccaGAGCGAaCCgCAGCCGGc -3'
miRNA:   3'- gaCGGCuGC----UUCGCUaGG-GUCGGCUa -5'
30998 5' -58 NC_006560.1 + 131181 0.66 0.827747
Target:  5'- -cGCCG-CGggG-GcgCCCGGCCGc- -3'
miRNA:   3'- gaCGGCuGCuuCgCuaGGGUCGGCua -5'
30998 5' -58 NC_006560.1 + 131048 0.67 0.774655
Target:  5'- -gGCCGACGcugaaGGUCCCGGCgGGc -3'
miRNA:   3'- gaCGGCUGCuucg-CUAGGGUCGgCUa -5'
30998 5' -58 NC_006560.1 + 130615 0.66 0.819291
Target:  5'- -gGCCGcGCGGcuGGCGugggCCCGGCUGGc -3'
miRNA:   3'- gaCGGC-UGCU--UCGCua--GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 128306 0.68 0.677097
Target:  5'- -cGCCcGCGggGCG-UCCCcccggGGCCGGg -3'
miRNA:   3'- gaCGGcUGCuuCGCuAGGG-----UCGGCUa -5'
30998 5' -58 NC_006560.1 + 127692 0.67 0.750135
Target:  5'- -cGCCGACGucgcggugcgugacGGUGGUCCgCGcGCCGAUg -3'
miRNA:   3'- gaCGGCUGCu-------------UCGCUAGG-GU-CGGCUA- -5'
30998 5' -58 NC_006560.1 + 127589 0.69 0.636557
Target:  5'- aUGCUGuACgGggGCGA-CCUGGCCGAg -3'
miRNA:   3'- gACGGC-UG-CuuCGCUaGGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 125184 0.71 0.545842
Target:  5'- -gGCCGGCGGcgaaaagaGGCGGUgCCCGGCCc-- -3'
miRNA:   3'- gaCGGCUGCU--------UCGCUA-GGGUCGGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.