miRNA display CGI


Results 61 - 80 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 33488 0.67 0.998191
Target:  5'- gGGGGCcgccgGCAGgGAGGCGG----GCGCc -3'
miRNA:   3'- gCUCUG-----CGUCgCUCUGCUuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 93008 0.67 0.998191
Target:  5'- uCGGGGCGUucggGGcCGAgGACGAc--GACGCg -3'
miRNA:   3'- -GCUCUGCG----UC-GCU-CUGCUuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 107759 0.67 0.998191
Target:  5'- aGGuGCGCGGCGAGgagcGCGGccaguACGCg -3'
miRNA:   3'- gCUcUGCGUCGCUC----UGCUuauu-UGCG- -5'
30999 5' -49 NC_006560.1 + 124764 0.67 0.998191
Target:  5'- cCGcGACGCcgAGgGGGGCGAGgccgggcGGCGCu -3'
miRNA:   3'- -GCuCUGCG--UCgCUCUGCUUau-----UUGCG- -5'
30999 5' -49 NC_006560.1 + 139321 0.67 0.998191
Target:  5'- -cGGGCGCGGgaGAGGCGG----GCGCc -3'
miRNA:   3'- gcUCUGCGUCg-CUCUGCUuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 133792 0.67 0.998191
Target:  5'- gGuGugGC-GCGAGAucuUGAAgcAGCGCa -3'
miRNA:   3'- gCuCugCGuCGCUCU---GCUUauUUGCG- -5'
30999 5' -49 NC_006560.1 + 130784 0.67 0.998191
Target:  5'- uCGAGGUGC-GCGAGGCGGugcuGCGg -3'
miRNA:   3'- -GCUCUGCGuCGCUCUGCUuauuUGCg -5'
30999 5' -49 NC_006560.1 + 15673 0.67 0.998191
Target:  5'- cCGAGACccagGCGGcCGGGACc---GAGCGCc -3'
miRNA:   3'- -GCUCUG----CGUC-GCUCUGcuuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 7001 0.67 0.998191
Target:  5'- cCGAGAgGCcGCGAaGGCGAu----CGCc -3'
miRNA:   3'- -GCUCUgCGuCGCU-CUGCUuauuuGCG- -5'
30999 5' -49 NC_006560.1 + 25957 0.67 0.997835
Target:  5'- gCGAGGgcCGCGG-GGGGCGAGggc-CGCg -3'
miRNA:   3'- -GCUCU--GCGUCgCUCUGCUUauuuGCG- -5'
30999 5' -49 NC_006560.1 + 53477 0.67 0.997835
Target:  5'- cCGAGGcCGCGGCGGcgcGCGAGgacGACGa -3'
miRNA:   3'- -GCUCU-GCGUCGCUc--UGCUUau-UUGCg -5'
30999 5' -49 NC_006560.1 + 67030 0.67 0.997835
Target:  5'- uCGGGccguCGCGGCGAG-CGccGGUGGGcCGCa -3'
miRNA:   3'- -GCUCu---GCGUCGCUCuGC--UUAUUU-GCG- -5'
30999 5' -49 NC_006560.1 + 68424 0.67 0.997835
Target:  5'- -uGGAgGCGGCGGGACu-----GCGCa -3'
miRNA:   3'- gcUCUgCGUCGCUCUGcuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 72149 0.67 0.997835
Target:  5'- gCGAGACGUAucuGCaGGACGAgccguucgucgAgcGACGCg -3'
miRNA:   3'- -GCUCUGCGU---CGcUCUGCU-----------UauUUGCG- -5'
30999 5' -49 NC_006560.1 + 91827 0.67 0.997835
Target:  5'- cCGAGAC-CGGCuucgaGGGCGAcguGGCGCg -3'
miRNA:   3'- -GCUCUGcGUCGc----UCUGCUuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 97250 0.67 0.997835
Target:  5'- aCGGGACGCAcGUGAagGugGGccAggUGCa -3'
miRNA:   3'- -GCUCUGCGU-CGCU--CugCUuaUuuGCG- -5'
30999 5' -49 NC_006560.1 + 101786 0.67 0.997835
Target:  5'- cCGGGG-GCGGCGGcaggacgccguGGCGGAgcAGCGCc -3'
miRNA:   3'- -GCUCUgCGUCGCU-----------CUGCUUauUUGCG- -5'
30999 5' -49 NC_006560.1 + 115448 0.67 0.997835
Target:  5'- gCGAGAuCGUGGCGcGGCuGGUGGcGCGCg -3'
miRNA:   3'- -GCUCU-GCGUCGCuCUGcUUAUU-UGCG- -5'
30999 5' -49 NC_006560.1 + 148498 0.67 0.997835
Target:  5'- gGAGGCcuccCGGCGGGACGGcgGuccGACGg -3'
miRNA:   3'- gCUCUGc---GUCGCUCUGCUuaU---UUGCg -5'
30999 5' -49 NC_006560.1 + 115277 0.67 0.997835
Target:  5'- --uGACGCAcGCGGGcaccGCGAGccuGCGCa -3'
miRNA:   3'- gcuCUGCGU-CGCUC----UGCUUauuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.