miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 57645 0.66 0.998958
Target:  5'- -cGGGCGCacccgGGCGcacacccGGGCGGcgAGGCGCg -3'
miRNA:   3'- gcUCUGCG-----UCGC-------UCUGCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 4022 0.66 0.998758
Target:  5'- gGGGGCgGCGGCGgcgucccgGGGCGGc--GGCGCg -3'
miRNA:   3'- gCUCUG-CGUCGC--------UCUGCUuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 14065 0.66 0.998758
Target:  5'- gGAGACGUucuGGCGGcGGCGc----GCGCa -3'
miRNA:   3'- gCUCUGCG---UCGCU-CUGCuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 119215 0.66 0.998758
Target:  5'- gCGGGGCGaccguGCG-GACGAcgGAcCGCc -3'
miRNA:   3'- -GCUCUGCgu---CGCuCUGCUuaUUuGCG- -5'
30999 5' -49 NC_006560.1 + 130537 0.66 0.998758
Target:  5'- gCGcGGCGCcGCGcuGGGCG--UGGACGCg -3'
miRNA:   3'- -GCuCUGCGuCGC--UCUGCuuAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 2022 0.66 0.998758
Target:  5'- --cGGCGuCGGCGAGcaGCGuGUcgGCGCg -3'
miRNA:   3'- gcuCUGC-GUCGCUC--UGCuUAuuUGCG- -5'
30999 5' -49 NC_006560.1 + 127697 0.66 0.998758
Target:  5'- aCGucGCGguGCGuGACGGugGUccGCGCg -3'
miRNA:   3'- -GCucUGCguCGCuCUGCU--UAuuUGCG- -5'
30999 5' -49 NC_006560.1 + 150184 0.66 0.998758
Target:  5'- aGAGACcgacgGCGGcCGAGAgUGAGgguggcGAGCGCg -3'
miRNA:   3'- gCUCUG-----CGUC-GCUCU-GCUUa-----UUUGCG- -5'
30999 5' -49 NC_006560.1 + 14345 0.66 0.998758
Target:  5'- cCGAcGACG-AGCGGGA-GA--GAGCGCa -3'
miRNA:   3'- -GCU-CUGCgUCGCUCUgCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 60367 0.66 0.998497
Target:  5'- uCGGGGCGCAugGAGGcCGAc--GACGCg -3'
miRNA:   3'- -GCUCUGCGUcgCUCU-GCUuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 92697 0.66 0.998497
Target:  5'- gCGGGGCGCA-CGAGagcucgcucuGCGAGcagcuGCGCg -3'
miRNA:   3'- -GCUCUGCGUcGCUC----------UGCUUauu--UGCG- -5'
30999 5' -49 NC_006560.1 + 47160 0.66 0.998497
Target:  5'- gGAGGCGCcgagcucGCGAGGCGcGAgggGGGcCGCu -3'
miRNA:   3'- gCUCUGCGu------CGCUCUGC-UUa--UUU-GCG- -5'
30999 5' -49 NC_006560.1 + 69838 0.66 0.998497
Target:  5'- gGGGACGCccuGCGGGccACGu----GCGCg -3'
miRNA:   3'- gCUCUGCGu--CGCUC--UGCuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 92852 0.66 0.998497
Target:  5'- aCGAGuACcuCGGCGAGGa-GAUGAugGCg -3'
miRNA:   3'- -GCUC-UGc-GUCGCUCUgcUUAUUugCG- -5'
30999 5' -49 NC_006560.1 + 142723 0.66 0.998497
Target:  5'- cCGAGGCGCccGGgGGGcccgGCGGAgcccGGCGCc -3'
miRNA:   3'- -GCUCUGCG--UCgCUC----UGCUUau--UUGCG- -5'
30999 5' -49 NC_006560.1 + 92379 0.66 0.998468
Target:  5'- gCGGcGGCGCGGCccugGAGGcCGGggcccgcgcgcucGUGGACGCg -3'
miRNA:   3'- -GCU-CUGCGUCG----CUCU-GCU-------------UAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 133792 0.67 0.998191
Target:  5'- gGuGugGC-GCGAGAucuUGAAgcAGCGCa -3'
miRNA:   3'- gCuCugCGuCGCUCU---GCUUauUUGCG- -5'
30999 5' -49 NC_006560.1 + 130784 0.67 0.998191
Target:  5'- uCGAGGUGC-GCGAGGCGGugcuGCGg -3'
miRNA:   3'- -GCUCUGCGuCGCUCUGCUuauuUGCg -5'
30999 5' -49 NC_006560.1 + 15673 0.67 0.998191
Target:  5'- cCGAGACccagGCGGcCGGGACc---GAGCGCc -3'
miRNA:   3'- -GCUCUG----CGUC-GCUCUGcuuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 7001 0.67 0.998191
Target:  5'- cCGAGAgGCcGCGAaGGCGAu----CGCc -3'
miRNA:   3'- -GCUCUgCGuCGCU-CUGCUuauuuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.