miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 134746 0.66 0.999165
Target:  5'- gCGAuGCGCGcCGAGuCGAAggcGCGCg -3'
miRNA:   3'- -GCUcUGCGUcGCUCuGCUUauuUGCG- -5'
30999 5' -49 NC_006560.1 + 137245 0.66 0.999165
Target:  5'- gGGGGCGCGG-GcGGCGGGc-GACGCc -3'
miRNA:   3'- gCUCUGCGUCgCuCUGCUUauUUGCG- -5'
30999 5' -49 NC_006560.1 + 42600 0.66 0.999165
Target:  5'- aGAGACGC-GCGucccGCGu---GACGCg -3'
miRNA:   3'- gCUCUGCGuCGCuc--UGCuuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 59421 0.66 0.999165
Target:  5'- gCGAGGgggccCGguGCG-GACGAGggGggUGCg -3'
miRNA:   3'- -GCUCU-----GCguCGCuCUGCUUa-UuuGCG- -5'
30999 5' -49 NC_006560.1 + 99752 0.66 0.999165
Target:  5'- cCGAcGACGCc-CGGGugGGG-GGGCGCg -3'
miRNA:   3'- -GCU-CUGCGucGCUCugCUUaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 14209 0.66 0.999095
Target:  5'- gGGGugGUcgGGCGGGGCGcccgcgguCGCg -3'
miRNA:   3'- gCUCugCG--UCGCUCUGCuuauuu--GCG- -5'
30999 5' -49 NC_006560.1 + 118187 0.66 0.999057
Target:  5'- aCGAGGagauccucgcgcuggUGCAGCGGGcCGugcgGGACGUg -3'
miRNA:   3'- -GCUCU---------------GCGUCGCUCuGCuua-UUUGCG- -5'
30999 5' -49 NC_006560.1 + 139108 0.66 0.999057
Target:  5'- aCGAcGACGUcuuggugcaggcgauGGCGAgguuGACGAGcgagAGGCGCa -3'
miRNA:   3'- -GCU-CUGCG---------------UCGCU----CUGCUUa---UUUGCG- -5'
30999 5' -49 NC_006560.1 + 3329 0.66 0.998979
Target:  5'- gGGGGCGCgGGCG-GGCGGcGUcgGCGUc -3'
miRNA:   3'- gCUCUGCG-UCGCuCUGCU-UAuuUGCG- -5'
30999 5' -49 NC_006560.1 + 132048 0.66 0.998979
Target:  5'- gCGcuGCGCGGCGGGGCGcugcUGGACu- -3'
miRNA:   3'- -GCucUGCGUCGCUCUGCuu--AUUUGcg -5'
30999 5' -49 NC_006560.1 + 133553 0.66 0.998979
Target:  5'- gCGGcGCGCGGCGuGGCGGAcgucGGCGa -3'
miRNA:   3'- -GCUcUGCGUCGCuCUGCUUau--UUGCg -5'
30999 5' -49 NC_006560.1 + 139394 0.66 0.998979
Target:  5'- gGAGGCGaggaCGGCGAgcGugGAggGAACGg -3'
miRNA:   3'- gCUCUGC----GUCGCU--CugCUuaUUUGCg -5'
30999 5' -49 NC_006560.1 + 25098 0.66 0.998979
Target:  5'- --cGcCGCGGCGAGGCGcacu--CGCa -3'
miRNA:   3'- gcuCuGCGUCGCUCUGCuuauuuGCG- -5'
30999 5' -49 NC_006560.1 + 26098 0.66 0.998979
Target:  5'- --cGGCGCGGCGGGggcuucGCGGGggcuuCGCg -3'
miRNA:   3'- gcuCUGCGUCGCUC------UGCUUauuu-GCG- -5'
30999 5' -49 NC_006560.1 + 26390 0.66 0.998979
Target:  5'- cCGGGGCGCAGgGGcGCGcccccGGGCGUg -3'
miRNA:   3'- -GCUCUGCGUCgCUcUGCuua--UUUGCG- -5'
30999 5' -49 NC_006560.1 + 27211 0.66 0.998979
Target:  5'- cCGGGAC-C-GCGGGGCGGGgccgGGACcGCg -3'
miRNA:   3'- -GCUCUGcGuCGCUCUGCUUa---UUUG-CG- -5'
30999 5' -49 NC_006560.1 + 62961 0.66 0.998979
Target:  5'- gCGAGcUGCGcCGAGGCGAcgGugggcaucAGCGCg -3'
miRNA:   3'- -GCUCuGCGUcGCUCUGCUuaU--------UUGCG- -5'
30999 5' -49 NC_006560.1 + 94721 0.66 0.998979
Target:  5'- aCGAGACgGCGGUGGcggccGuCGAGcuGGCGCu -3'
miRNA:   3'- -GCUCUG-CGUCGCU-----CuGCUUauUUGCG- -5'
30999 5' -49 NC_006560.1 + 131917 0.66 0.998979
Target:  5'- aGaAGGCGCGGCuuGccGCGGAggAGGCGCu -3'
miRNA:   3'- gC-UCUGCGUCGcuC--UGCUUa-UUUGCG- -5'
30999 5' -49 NC_006560.1 + 142282 0.66 0.998979
Target:  5'- cCGGGAUaaaagGCGGCGGGcGCGGcc-GGCGCc -3'
miRNA:   3'- -GCUCUG-----CGUCGCUC-UGCUuauUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.