miRNA display CGI


Results 21 - 40 of 306 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 5262 0.73 0.92967
Target:  5'- gCGAgGACGCGGCGGcggcGGCGAGgucGGCGUc -3'
miRNA:   3'- -GCU-CUGCGUCGCU----CUGCUUau-UUGCG- -5'
30999 5' -49 NC_006560.1 + 5671 0.66 0.999322
Target:  5'- cCGGGGCGCGG--GGGCGGccGgcGGCGCc -3'
miRNA:   3'- -GCUCUGCGUCgcUCUGCU--UauUUGCG- -5'
30999 5' -49 NC_006560.1 + 7001 0.67 0.998191
Target:  5'- cCGAGAgGCcGCGAaGGCGAu----CGCc -3'
miRNA:   3'- -GCUCUgCGuCGCU-CUGCUuauuuGCG- -5'
30999 5' -49 NC_006560.1 + 8204 0.74 0.885656
Target:  5'- aGGGAUuCGGCGGGGgGAggGGACGCg -3'
miRNA:   3'- gCUCUGcGUCGCUCUgCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 8622 0.72 0.953443
Target:  5'- cCGAGAUgaggGCGGCGAGgACGAAccc-CGCg -3'
miRNA:   3'- -GCUCUG----CGUCGCUC-UGCUUauuuGCG- -5'
30999 5' -49 NC_006560.1 + 8929 0.67 0.996397
Target:  5'- gCGGGGCGCGG-GGGGCuuuUAuGCGCc -3'
miRNA:   3'- -GCUCUGCGUCgCUCUGcuuAUuUGCG- -5'
30999 5' -49 NC_006560.1 + 9080 0.86 0.341544
Target:  5'- gGAGGgGCGGCGGGGCGAcggcgGAGCGCg -3'
miRNA:   3'- gCUCUgCGUCGCUCUGCUua---UUUGCG- -5'
30999 5' -49 NC_006560.1 + 9590 0.9 0.203718
Target:  5'- aCGAGGCGCGGCGAG-CGGAgcgcgGGGCGCg -3'
miRNA:   3'- -GCUCUGCGUCGCUCuGCUUa----UUUGCG- -5'
30999 5' -49 NC_006560.1 + 9957 0.67 0.998191
Target:  5'- aCGGGGCGuCGGCG-GGCGA----GCGg -3'
miRNA:   3'- -GCUCUGC-GUCGCuCUGCUuauuUGCg -5'
30999 5' -49 NC_006560.1 + 10159 0.69 0.991179
Target:  5'- uGGGuGCGCAGgGAGACcgu--GACGCc -3'
miRNA:   3'- gCUC-UGCGUCgCUCUGcuuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 11150 0.69 0.988496
Target:  5'- cCGGGgcgGCGCGGCGAGcGCGAGaguuccgGGAuCGCg -3'
miRNA:   3'- -GCUC---UGCGUCGCUC-UGCUUa------UUU-GCG- -5'
30999 5' -49 NC_006560.1 + 11334 0.74 0.899493
Target:  5'- uCGGGGCGacCGGCGAGGgGGggcgGUAGAUGCg -3'
miRNA:   3'- -GCUCUGC--GUCGCUCUgCU----UAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 12016 0.67 0.996945
Target:  5'- gCGaAGGCGaCGGCGuGGCGGcgGGggcACGCc -3'
miRNA:   3'- -GC-UCUGC-GUCGCuCUGCUuaUU---UGCG- -5'
30999 5' -49 NC_006560.1 + 12072 0.67 0.997422
Target:  5'- gCGGGG-GCAGCGGucgcccGGCGggUAGugGa -3'
miRNA:   3'- -GCUCUgCGUCGCU------CUGCuuAUUugCg -5'
30999 5' -49 NC_006560.1 + 12716 0.69 0.988496
Target:  5'- gGGGugGgGGCGGGGCccuGGAUGguGACGUc -3'
miRNA:   3'- gCUCugCgUCGCUCUG---CUUAU--UUGCG- -5'
30999 5' -49 NC_006560.1 + 13661 0.75 0.870852
Target:  5'- cCGAGACGCAcGCGAGcGCGAccgccaacaccGgcAACGCc -3'
miRNA:   3'- -GCUCUGCGU-CGCUC-UGCU-----------UauUUGCG- -5'
30999 5' -49 NC_006560.1 + 14065 0.66 0.998758
Target:  5'- gGAGACGUucuGGCGGcGGCGc----GCGCa -3'
miRNA:   3'- gCUCUGCG---UCGCU-CUGCuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 14209 0.66 0.999095
Target:  5'- gGGGugGUcgGGCGGGGCGcccgcgguCGCg -3'
miRNA:   3'- gCUCugCG--UCGCUCUGCuuauuu--GCG- -5'
30999 5' -49 NC_006560.1 + 14345 0.66 0.998758
Target:  5'- cCGAcGACG-AGCGGGA-GA--GAGCGCa -3'
miRNA:   3'- -GCU-CUGCgUCGCUCUgCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 14373 0.76 0.821124
Target:  5'- uGGGGCGaGGCGAGGCGGGgcGACGa -3'
miRNA:   3'- gCUCUGCgUCGCUCUGCUUauUUGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.