miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 44794 0.76 0.821124
Target:  5'- uGGGGCucuGCGGCGAGACGAcguccgccGCGCg -3'
miRNA:   3'- gCUCUG---CGUCGCUCUGCUuauu----UGCG- -5'
30999 5' -49 NC_006560.1 + 14373 0.76 0.821124
Target:  5'- uGGGGCGaGGCGAGGCGGGgcGACGa -3'
miRNA:   3'- gCUCUGCgUCGCUCUGCUUauUUGCg -5'
30999 5' -49 NC_006560.1 + 57193 0.75 0.838529
Target:  5'- gCGAG-CGCGGCGGcGACGAGgaaGGugGCc -3'
miRNA:   3'- -GCUCuGCGUCGCU-CUGCUUa--UUugCG- -5'
30999 5' -49 NC_006560.1 + 3113 0.75 0.838529
Target:  5'- gCGAGgccaGCGCGcGCGGGuCGAacAUGAGCGCg -3'
miRNA:   3'- -GCUC----UGCGU-CGCUCuGCU--UAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 118118 0.75 0.838529
Target:  5'- cCGAGGCGCAGCucgcggcgccgGGGGCGG----ACGCg -3'
miRNA:   3'- -GCUCUGCGUCG-----------CUCUGCUuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 72044 0.75 0.846933
Target:  5'- cCGAGGCGCGGUG-GGCGGGggcGAugGUc -3'
miRNA:   3'- -GCUCUGCGUCGCuCUGCUUa--UUugCG- -5'
30999 5' -49 NC_006560.1 + 27623 0.75 0.846933
Target:  5'- cCGAGcuCGCGGCGGGcGCGGccGGGCGCg -3'
miRNA:   3'- -GCUCu-GCGUCGCUC-UGCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 139781 0.75 0.855126
Target:  5'- gCGcGAUGCGGCGAGcCGAcgGacGACGCu -3'
miRNA:   3'- -GCuCUGCGUCGCUCuGCUuaU--UUGCG- -5'
30999 5' -49 NC_006560.1 + 139676 0.75 0.863101
Target:  5'- uCGAGA-GCGGCGA--CGggUGAGCGUa -3'
miRNA:   3'- -GCUCUgCGUCGCUcuGCuuAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 108535 0.75 0.863101
Target:  5'- gGGGGCGCGuCGGGGCGGc-AGACGCg -3'
miRNA:   3'- gCUCUGCGUcGCUCUGCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 143012 0.75 0.863101
Target:  5'- cCGAGACGCccGGCGGGACaGGUAGGuuccucccCGCg -3'
miRNA:   3'- -GCUCUGCG--UCGCUCUGcUUAUUU--------GCG- -5'
30999 5' -49 NC_006560.1 + 13661 0.75 0.870852
Target:  5'- cCGAGACGCAcGCGAGcGCGAccgccaacaccGgcAACGCc -3'
miRNA:   3'- -GCUCUGCGU-CGCUC-UGCU-----------UauUUGCG- -5'
30999 5' -49 NC_006560.1 + 14764 0.75 0.870852
Target:  5'- gGGGGCuCGGCGGGAgGggUGGGgGCg -3'
miRNA:   3'- gCUCUGcGUCGCUCUgCuuAUUUgCG- -5'
30999 5' -49 NC_006560.1 + 32806 0.75 0.870852
Target:  5'- gGGGGCGCGGcCGGGGaGAacAUGGGCGCu -3'
miRNA:   3'- gCUCUGCGUC-GCUCUgCU--UAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 21248 0.74 0.878372
Target:  5'- gGGGACGCcGCGcAGGCGcGGUGAGgGCg -3'
miRNA:   3'- gCUCUGCGuCGC-UCUGC-UUAUUUgCG- -5'
30999 5' -49 NC_006560.1 + 8204 0.74 0.885656
Target:  5'- aGGGAUuCGGCGGGGgGAggGGACGCg -3'
miRNA:   3'- gCUCUGcGUCGCUCUgCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 54644 0.74 0.885656
Target:  5'- gCGAcGGCGC-GCGGGAUGAGggucgcggGGGCGCg -3'
miRNA:   3'- -GCU-CUGCGuCGCUCUGCUUa-------UUUGCG- -5'
30999 5' -49 NC_006560.1 + 35359 0.74 0.892697
Target:  5'- cCGAGGCGCGcGCGGGGCccggcuGCGCc -3'
miRNA:   3'- -GCUCUGCGU-CGCUCUGcuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 100179 0.74 0.899493
Target:  5'- gGAGA-GCAGCGc-GCGggUGAGCGUc -3'
miRNA:   3'- gCUCUgCGUCGCucUGCuuAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 11334 0.74 0.899493
Target:  5'- uCGGGGCGacCGGCGAGGgGGggcgGUAGAUGCg -3'
miRNA:   3'- -GCUCUGC--GUCGCUCUgCU----UAUUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.