miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 138722 1.14 0.007294
Target:  5'- cCGAGACGCAGCGAGACGAAUAAACGCg -3'
miRNA:   3'- -GCUCUGCGUCGCUCUGCUUAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 9590 0.9 0.203718
Target:  5'- aCGAGGCGCGGCGAG-CGGAgcgcgGGGCGCg -3'
miRNA:   3'- -GCUCUGCGUCGCUCuGCUUa----UUUGCG- -5'
30999 5' -49 NC_006560.1 + 9080 0.86 0.341544
Target:  5'- gGAGGgGCGGCGGGGCGAcggcgGAGCGCg -3'
miRNA:   3'- gCUCUgCGUCGCUCUGCUua---UUUGCG- -5'
30999 5' -49 NC_006560.1 + 138786 0.85 0.365989
Target:  5'- gCGGGAU-CGGCGAGGCGggUGGACGUg -3'
miRNA:   3'- -GCUCUGcGUCGCUCUGCuuAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 16298 0.82 0.534326
Target:  5'- uGGGGCGCGGCGGGGCGcgggcccgcgcccGcgAGGCGCa -3'
miRNA:   3'- gCUCUGCGUCGCUCUGC-------------UuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 92898 0.82 0.535354
Target:  5'- gGAG-CGCGGCGGcGGCGAGUGGACGa -3'
miRNA:   3'- gCUCuGCGUCGCU-CUGCUUAUUUGCg -5'
30999 5' -49 NC_006560.1 + 74349 0.8 0.619308
Target:  5'- cCGAGACGCGGCGccuGGcCGAG--GACGCg -3'
miRNA:   3'- -GCUCUGCGUCGC---UCuGCUUauUUGCG- -5'
30999 5' -49 NC_006560.1 + 99935 0.8 0.619308
Target:  5'- -cGGGCGCGGCG-GACGGGaGGGCGCg -3'
miRNA:   3'- gcUCUGCGUCGCuCUGCUUaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 2534 0.79 0.682903
Target:  5'- cCGaAGACGCGGCcgGAGGCGAGcacGGCGCg -3'
miRNA:   3'- -GC-UCUGCGUCG--CUCUGCUUau-UUGCG- -5'
30999 5' -49 NC_006560.1 + 53756 0.78 0.699673
Target:  5'- cCGAGACGCuGCGGGGCGGcccgucgguCGCg -3'
miRNA:   3'- -GCUCUGCGuCGCUCUGCUuauuu----GCG- -5'
30999 5' -49 NC_006560.1 + 149215 0.77 0.744855
Target:  5'- gGGGGCGCGGCccGGGGCGGAccgucgagGGGCGCa -3'
miRNA:   3'- gCUCUGCGUCG--CUCUGCUUa-------UUUGCG- -5'
30999 5' -49 NC_006560.1 + 55030 0.77 0.744855
Target:  5'- aGGcGCGCGGCGAGACGAGcgacggaucgucUGGGCGUc -3'
miRNA:   3'- gCUcUGCGUCGCUCUGCUU------------AUUUGCG- -5'
30999 5' -49 NC_006560.1 + 100851 0.77 0.744855
Target:  5'- aGGGGCGguGuCGGGACGGA---GCGCg -3'
miRNA:   3'- gCUCUGCguC-GCUCUGCUUauuUGCG- -5'
30999 5' -49 NC_006560.1 + 89981 0.77 0.754868
Target:  5'- aCGAGACcacCGGCGAGGCGcuGUGcGCGCg -3'
miRNA:   3'- -GCUCUGc--GUCGCUCUGCu-UAUuUGCG- -5'
30999 5' -49 NC_006560.1 + 94517 0.77 0.764765
Target:  5'- gCGAG-CGCGGCcccgcGGACGAGUcgGCGCg -3'
miRNA:   3'- -GCUCuGCGUCGc----UCUGCUUAuuUGCG- -5'
30999 5' -49 NC_006560.1 + 86985 0.77 0.774534
Target:  5'- -cAGACGCAGCaGGcACGuGUAGACGCg -3'
miRNA:   3'- gcUCUGCGUCGcUC-UGCuUAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 91289 0.77 0.784166
Target:  5'- gGAGACGUAccGCGcGGCGAccGAGCGCg -3'
miRNA:   3'- gCUCUGCGU--CGCuCUGCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 95188 0.76 0.793651
Target:  5'- gCGAGcaGCGCGGCGAGcuCGAGaAGAUGCu -3'
miRNA:   3'- -GCUC--UGCGUCGCUCu-GCUUaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 132328 0.76 0.811231
Target:  5'- cCGGGGCGCAcgcggucGCGGGGCGGGggu-CGCg -3'
miRNA:   3'- -GCUCUGCGU-------CGCUCUGCUUauuuGCG- -5'
30999 5' -49 NC_006560.1 + 44794 0.76 0.821124
Target:  5'- uGGGGCucuGCGGCGAGACGAcguccgccGCGCg -3'
miRNA:   3'- gCUCUG---CGUCGCUCUGCUuauu----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.