miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 20 0.7 0.976587
Target:  5'- gCGGGGCgguucgGCGGCGGGGgGggUGcguuugggggGGCGCg -3'
miRNA:   3'- -GCUCUG------CGUCGCUCUgCuuAU----------UUGCG- -5'
30999 5' -49 NC_006560.1 + 1488 0.69 0.986936
Target:  5'- gGAGGCGC-GCGGcccacgccGGCGG--GAGCGCg -3'
miRNA:   3'- gCUCUGCGuCGCU--------CUGCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 2022 0.66 0.998758
Target:  5'- --cGGCGuCGGCGAGcaGCGuGUcgGCGCg -3'
miRNA:   3'- gcuCUGC-GUCGCUC--UGCuUAuuUGCG- -5'
30999 5' -49 NC_006560.1 + 2490 0.74 0.906038
Target:  5'- aGAGGCGC-GCGcAGGCGGccucGACGCg -3'
miRNA:   3'- gCUCUGCGuCGC-UCUGCUuau-UUGCG- -5'
30999 5' -49 NC_006560.1 + 2534 0.79 0.682903
Target:  5'- cCGaAGACGCGGCcgGAGGCGAGcacGGCGCg -3'
miRNA:   3'- -GC-UCUGCGUCG--CUCUGCUUau-UUGCG- -5'
30999 5' -49 NC_006560.1 + 2921 0.72 0.957445
Target:  5'- -cAGGCG-GGCGGGGCGGGggAGACGCc -3'
miRNA:   3'- gcUCUGCgUCGCUCUGCUUa-UUUGCG- -5'
30999 5' -49 NC_006560.1 + 3031 0.72 0.944694
Target:  5'- gCGcGGCGCAGCGGGccCGAG---GCGCg -3'
miRNA:   3'- -GCuCUGCGUCGCUCu-GCUUauuUGCG- -5'
30999 5' -49 NC_006560.1 + 3113 0.75 0.838529
Target:  5'- gCGAGgccaGCGCGcGCGGGuCGAacAUGAGCGCg -3'
miRNA:   3'- -GCUC----UGCGU-CGCUCuGCU--UAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 3289 0.66 0.999322
Target:  5'- uCGGGccCGCcgGGCG-GGCGGgcgGUGAGCGCc -3'
miRNA:   3'- -GCUCu-GCG--UCGCuCUGCU---UAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 3329 0.66 0.998979
Target:  5'- gGGGGCGCgGGCG-GGCGGcGUcgGCGUc -3'
miRNA:   3'- gCUCUGCG-UCGCuCUGCU-UAuuUGCG- -5'
30999 5' -49 NC_006560.1 + 3368 0.68 0.995771
Target:  5'- --cGGCGuCGGCGggcGGGCGGGcGGGCGCg -3'
miRNA:   3'- gcuCUGC-GUCGC---UCUGCUUaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 3551 0.67 0.996945
Target:  5'- --cGGCgGCGGCGGcGcCGAcgGAGCGCa -3'
miRNA:   3'- gcuCUG-CGUCGCU-CuGCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 3601 0.69 0.986771
Target:  5'- aGcGGCGCGGCGGcgccggcGACGAGgcccacGGCGCg -3'
miRNA:   3'- gCuCUGCGUCGCU-------CUGCUUau----UUGCG- -5'
30999 5' -49 NC_006560.1 + 3669 0.72 0.944694
Target:  5'- gGGGACGCGgaggucgccGCGcAGGCGcAUGAGCGUc -3'
miRNA:   3'- gCUCUGCGU---------CGC-UCUGCuUAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 3747 0.71 0.964731
Target:  5'- -cGGGCGCGGCGcGGGCGcGgcGGCGCc -3'
miRNA:   3'- gcUCUGCGUCGC-UCUGCuUauUUGCG- -5'
30999 5' -49 NC_006560.1 + 3773 0.67 0.996397
Target:  5'- ---cGCGCGGCGGGACcGcgGcGCGCg -3'
miRNA:   3'- gcucUGCGUCGCUCUGcUuaUuUGCG- -5'
30999 5' -49 NC_006560.1 + 4022 0.66 0.998758
Target:  5'- gGGGGCgGCGGCGgcgucccgGGGCGGc--GGCGCg -3'
miRNA:   3'- gCUCUG-CGUCGC--------UCUGCUuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 4080 0.68 0.992321
Target:  5'- ---cGCGcCAGCaGGGGCGcGUAGGCGCg -3'
miRNA:   3'- gcucUGC-GUCG-CUCUGCuUAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 5114 0.68 0.993627
Target:  5'- gGGGGCGCGGCGucGAUGAcccacaccgacucgcGGCGCg -3'
miRNA:   3'- gCUCUGCGUCGCu-CUGCUuau------------UUGCG- -5'
30999 5' -49 NC_006560.1 + 5177 0.69 0.986771
Target:  5'- gCGGGcCGCGGCGAcggcggccccgacGGCGGGgacAGCGCc -3'
miRNA:   3'- -GCUCuGCGUCGCU-------------CUGCUUau-UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.