miRNA display CGI


Results 1 - 20 of 306 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 150349 0.7 0.976587
Target:  5'- gCGGGGCgguucgGCGGCGGGGgGggUGcguuugggggGGCGCg -3'
miRNA:   3'- -GCUCUG------CGUCGCUCUgCuuAU----------UUGCG- -5'
30999 5' -49 NC_006560.1 + 150258 0.71 0.968024
Target:  5'- -cGGGCGCcGCGGGAgGAcgcGGACGCg -3'
miRNA:   3'- gcUCUGCGuCGCUCUgCUua-UUUGCG- -5'
30999 5' -49 NC_006560.1 + 150184 0.66 0.998758
Target:  5'- aGAGACcgacgGCGGcCGAGAgUGAGgguggcGAGCGCg -3'
miRNA:   3'- gCUCUG-----CGUC-GCUCU-GCUUa-----UUUGCG- -5'
30999 5' -49 NC_006560.1 + 149764 0.7 0.979027
Target:  5'- cCGGGGCGCGG--GGGCGucgAGGCGCc -3'
miRNA:   3'- -GCUCUGCGUCgcUCUGCuuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 149215 0.77 0.744855
Target:  5'- gGGGGCGCGGCccGGGGCGGAccgucgagGGGCGCa -3'
miRNA:   3'- gCUCUGCGUCG--CUCUGCUUa-------UUUGCG- -5'
30999 5' -49 NC_006560.1 + 148955 0.73 0.912331
Target:  5'- --cGACGgGGCGGGACGcgguGGCGCg -3'
miRNA:   3'- gcuCUGCgUCGCUCUGCuuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 148658 0.72 0.944694
Target:  5'- gGAGACGCGGCccaaauacGGGGCGccGUGGGCGg -3'
miRNA:   3'- gCUCUGCGUCG--------CUCUGCu-UAUUUGCg -5'
30999 5' -49 NC_006560.1 + 148498 0.67 0.997835
Target:  5'- gGAGGCcuccCGGCGGGACGGcgGuccGACGg -3'
miRNA:   3'- gCUCUGc---GUCGCUCUGCUuaU---UUGCg -5'
30999 5' -49 NC_006560.1 + 148466 0.67 0.996945
Target:  5'- uCGucuGGgGCGGCGGaGCGGAgggaGAGCGCg -3'
miRNA:   3'- -GCu--CUgCGUCGCUcUGCUUa---UUUGCG- -5'
30999 5' -49 NC_006560.1 + 147632 0.69 0.988496
Target:  5'- gGAGGCGguGCGuccAGAUGAaguccacggcgGUGccGGCGCg -3'
miRNA:   3'- gCUCUGCguCGC---UCUGCU-----------UAU--UUGCG- -5'
30999 5' -49 NC_006560.1 + 147379 0.72 0.957445
Target:  5'- gGGGGUGCgGGgGGGGCGGAgggGAGCGCg -3'
miRNA:   3'- gCUCUGCG-UCgCUCUGCUUa--UUUGCG- -5'
30999 5' -49 NC_006560.1 + 147338 0.69 0.989907
Target:  5'- aGAGACaGaCAGaGAGGCGGA--GACGCc -3'
miRNA:   3'- gCUCUG-C-GUCgCUCUGCUUauUUGCG- -5'
30999 5' -49 NC_006560.1 + 147211 0.72 0.949193
Target:  5'- gGAGGCGCGGgGGGcCGG---GGCGCc -3'
miRNA:   3'- gCUCUGCGUCgCUCuGCUuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 147124 0.68 0.995771
Target:  5'- gCGGGcCGCGgcGCGAGGCGc----GCGCg -3'
miRNA:   3'- -GCUCuGCGU--CGCUCUGCuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 147048 0.71 0.964731
Target:  5'- cCGGGGgGCGGCGGGGgGAGgcgGGCGg -3'
miRNA:   3'- -GCUCUgCGUCGCUCUgCUUau-UUGCg -5'
30999 5' -49 NC_006560.1 + 146847 0.66 0.999322
Target:  5'- gCGGcGGCGCggGGCGGGGCG-----GCGCc -3'
miRNA:   3'- -GCU-CUGCG--UCGCUCUGCuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 146446 0.7 0.981273
Target:  5'- cCGAcGACGCGG-GAGGCGGcgGAGgaGCg -3'
miRNA:   3'- -GCU-CUGCGUCgCUCUGCUuaUUUg-CG- -5'
30999 5' -49 NC_006560.1 + 146400 0.72 0.949193
Target:  5'- gGGGGCGgAGCGgcGGGCGGAggcgGAGCGg -3'
miRNA:   3'- gCUCUGCgUCGC--UCUGCUUa---UUUGCg -5'
30999 5' -49 NC_006560.1 + 146267 0.69 0.989907
Target:  5'- gGGGAgGUAGCGcGugGGGccGGACGCc -3'
miRNA:   3'- gCUCUgCGUCGCuCugCUUa-UUUGCG- -5'
30999 5' -49 NC_006560.1 + 145812 0.67 0.996625
Target:  5'- gCGGGcacacgcccggccucGCGCGGCGGGcCGG--GGGCGCc -3'
miRNA:   3'- -GCUC---------------UGCGUCGCUCuGCUuaUUUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.