miRNA display CGI


Results 41 - 60 of 306 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 14719 0.72 0.953443
Target:  5'- uCGAGGCcgGGCGAGGCGGugagGAACGg -3'
miRNA:   3'- -GCUCUGcgUCGCUCUGCUua--UUUGCg -5'
30999 5' -49 NC_006560.1 + 14764 0.75 0.870852
Target:  5'- gGGGGCuCGGCGGGAgGggUGGGgGCg -3'
miRNA:   3'- gCUCUGcGUCGCUCUgCuuAUUUgCG- -5'
30999 5' -49 NC_006560.1 + 15673 0.67 0.998191
Target:  5'- cCGAGACccagGCGGcCGGGACc---GAGCGCc -3'
miRNA:   3'- -GCUCUG----CGUC-GCUCUGcuuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 15883 0.68 0.993719
Target:  5'- gGGGGCcggcgaccggcgccaGCAGCGAGGCGuucaccaGGGCGUg -3'
miRNA:   3'- gCUCUG---------------CGUCGCUCUGCuua----UUUGCG- -5'
30999 5' -49 NC_006560.1 + 16250 0.7 0.976332
Target:  5'- gGGGugGCGuagcaauGCGAGGCGGcgc-GCGCg -3'
miRNA:   3'- gCUCugCGU-------CGCUCUGCUuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 16298 0.82 0.534326
Target:  5'- uGGGGCGCGGCGGGGCGcgggcccgcgcccGcgAGGCGCa -3'
miRNA:   3'- gCUCUGCGUCGCUCUGC-------------UuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 16615 0.69 0.986936
Target:  5'- ---aGCGCguccaGGCGGGGCGggUGuACGCc -3'
miRNA:   3'- gcucUGCG-----UCGCUCUGCuuAUuUGCG- -5'
30999 5' -49 NC_006560.1 + 16665 0.67 0.996397
Target:  5'- -cGGugGCGguacuGCGAGACGAGgcggGAGCccGCg -3'
miRNA:   3'- gcUCugCGU-----CGCUCUGCUUa---UUUG--CG- -5'
30999 5' -49 NC_006560.1 + 17105 0.68 0.993342
Target:  5'- gCGAGGCuCAG-GGGGCGGGagcGGGCGCg -3'
miRNA:   3'- -GCUCUGcGUCgCUCUGCUUa--UUUGCG- -5'
30999 5' -49 NC_006560.1 + 18979 0.68 0.993342
Target:  5'- cCGcGACGCcgcccccgaAGCGAGGcCGGAgu-ACGCg -3'
miRNA:   3'- -GCuCUGCG---------UCGCUCU-GCUUauuUGCG- -5'
30999 5' -49 NC_006560.1 + 20548 0.66 0.999377
Target:  5'- gCGAGG-GCGGggggcugggguucgcCGAGGCGGAcgcAAACGCa -3'
miRNA:   3'- -GCUCUgCGUC---------------GCUCUGCUUa--UUUGCG- -5'
30999 5' -49 NC_006560.1 + 20895 0.73 0.912331
Target:  5'- --cGGCGCGGCGuucccGGGCG-GUGGGCGCg -3'
miRNA:   3'- gcuCUGCGUCGC-----UCUGCuUAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 21034 0.69 0.991179
Target:  5'- gCGGGcCGgGGCGGGGCGccc--GCGCg -3'
miRNA:   3'- -GCUCuGCgUCGCUCUGCuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 21248 0.74 0.878372
Target:  5'- gGGGACGCcGCGcAGGCGcGGUGAGgGCg -3'
miRNA:   3'- gCUCUGCGuCGC-UCUGC-UUAUUUgCG- -5'
30999 5' -49 NC_006560.1 + 21277 0.68 0.994252
Target:  5'- gCGGcGGCGCGGCGcccucGACGcgaGGGCGCg -3'
miRNA:   3'- -GCU-CUGCGUCGCu----CUGCuuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 21839 0.69 0.986936
Target:  5'- --cGGC-CGGgGGGACGGAaGAGCGCg -3'
miRNA:   3'- gcuCUGcGUCgCUCUGCUUaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 22664 0.72 0.944694
Target:  5'- -cGGGCGCAGCGAG-CGccgccGCGCg -3'
miRNA:   3'- gcUCUGCGUCGCUCuGCuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 22916 0.69 0.986936
Target:  5'- gGAGGCGCgccGGCGcuACGAGgccgccGGCGCg -3'
miRNA:   3'- gCUCUGCG---UCGCucUGCUUau----UUGCG- -5'
30999 5' -49 NC_006560.1 + 25098 0.66 0.998979
Target:  5'- --cGcCGCGGCGAGGCGcacu--CGCa -3'
miRNA:   3'- gcuCuGCGUCGCUCUGCuuauuuGCG- -5'
30999 5' -49 NC_006560.1 + 25957 0.67 0.997835
Target:  5'- gCGAGGgcCGCGG-GGGGCGAGggc-CGCg -3'
miRNA:   3'- -GCUCU--GCGUCgCUCUGCUUauuuGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.