miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31000 5' -57 NC_006560.1 + 147200 0.75 0.40175
Target:  5'- cCUCCcccgcCGGagGCGCGGggggccgGGGCGCCUCCc -3'
miRNA:   3'- -GAGGa----GCCa-UGCGCUa------CUCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 139317 0.75 0.385136
Target:  5'- -gCCUCGG-GCGCGGgagaggcGGGCGCCUCg -3'
miRNA:   3'- gaGGAGCCaUGCGCUa------CUCGCGGAGg -5'
31000 5' -57 NC_006560.1 + 138052 1.12 0.001584
Target:  5'- gCUCCUCGGUACGCGAUGAGCGCCUCCg -3'
miRNA:   3'- -GAGGAGCCAUGCGCUACUCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 136591 0.7 0.679255
Target:  5'- uCUCCUCgcacaaggaGGUgaGCGCcuacAUGGcGCGCCUCCa -3'
miRNA:   3'- -GAGGAG---------CCA--UGCGc---UACU-CGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 135484 0.67 0.860102
Target:  5'- -cCCUCGGcccgguuuCGgGAUGAG-GCCUUCu -3'
miRNA:   3'- gaGGAGCCau------GCgCUACUCgCGGAGG- -5'
31000 5' -57 NC_006560.1 + 135165 0.74 0.472518
Target:  5'- gUCC-CGGUGCGCGGUGgcguugagcagGGCGCCg-- -3'
miRNA:   3'- gAGGaGCCAUGCGCUAC-----------UCGCGGagg -5'
31000 5' -57 NC_006560.1 + 133457 0.67 0.860102
Target:  5'- gUCCUCGGgccCGCGGgcuccGGgGCgUCCg -3'
miRNA:   3'- gAGGAGCCau-GCGCUac---UCgCGgAGG- -5'
31000 5' -57 NC_006560.1 + 133171 0.8 0.222751
Target:  5'- gUCCUCGG-AgGCGGUGAGgGCgUCCg -3'
miRNA:   3'- gAGGAGCCaUgCGCUACUCgCGgAGG- -5'
31000 5' -57 NC_006560.1 + 131552 0.71 0.649146
Target:  5'- -aCCUggCGGUcUGCGGgaacgaGGGCGCCUCCc -3'
miRNA:   3'- gaGGA--GCCAuGCGCUa-----CUCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 130207 0.66 0.864589
Target:  5'- gCUCUgccgcgacgcgcgCGGggACGCGGUGGcGCGCUUCg -3'
miRNA:   3'- -GAGGa------------GCCa-UGCGCUACU-CGCGGAGg -5'
31000 5' -57 NC_006560.1 + 127556 0.68 0.793969
Target:  5'- -gCC-CGGUACGCGucGAGCGUgUCg -3'
miRNA:   3'- gaGGaGCCAUGCGCuaCUCGCGgAGg -5'
31000 5' -57 NC_006560.1 + 125516 0.7 0.709025
Target:  5'- cCUCCgcgcCGGc-CGCGGUGcGCGCCgCCg -3'
miRNA:   3'- -GAGGa---GCCauGCGCUACuCGCGGaGG- -5'
31000 5' -57 NC_006560.1 + 124852 0.68 0.775863
Target:  5'- gUCCUCGuGgACGCGcacacgggcaugGUGGGCGCgUCUc -3'
miRNA:   3'- gAGGAGC-CaUGCGC------------UACUCGCGgAGG- -5'
31000 5' -57 NC_006560.1 + 118588 0.67 0.836615
Target:  5'- gUCCcgCGGcaccacUACGCGAccgGGGCGCgCUUCg -3'
miRNA:   3'- gAGGa-GCC------AUGCGCUa--CUCGCG-GAGG- -5'
31000 5' -57 NC_006560.1 + 117962 0.66 0.86754
Target:  5'- aCUUCUgcCGGUACGUG-UG-GCGCCUg- -3'
miRNA:   3'- -GAGGA--GCCAUGCGCuACuCGCGGAgg -5'
31000 5' -57 NC_006560.1 + 108113 0.67 0.836615
Target:  5'- gCUgCUCGGcgacCGCGccGAGCGCCagCg -3'
miRNA:   3'- -GAgGAGCCau--GCGCuaCUCGCGGagG- -5'
31000 5' -57 NC_006560.1 + 107756 0.68 0.802814
Target:  5'- -aCCa-GGUGCGCGGcgagGAGCGCggCCa -3'
miRNA:   3'- gaGGagCCAUGCGCUa---CUCGCGgaGG- -5'
31000 5' -57 NC_006560.1 + 103021 0.68 0.811509
Target:  5'- cCUCCgcgccCGGUcgACGCGcgGGGCGCgggcggCCg -3'
miRNA:   3'- -GAGGa----GCCA--UGCGCuaCUCGCGga----GG- -5'
31000 5' -57 NC_006560.1 + 102693 0.68 0.802814
Target:  5'- gCUCCUgGcGUcgGCGaCGAUGaAGCGCCUg- -3'
miRNA:   3'- -GAGGAgC-CA--UGC-GCUAC-UCGCGGAgg -5'
31000 5' -57 NC_006560.1 + 102437 0.68 0.801056
Target:  5'- cCUCCUCGGccgcCGCGGccgccgucuccAGgGCCUCCa -3'
miRNA:   3'- -GAGGAGCCau--GCGCUac---------UCgCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.