miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31000 5' -57 NC_006560.1 + 1102 0.67 0.852464
Target:  5'- gCUCCcCGGcgGCGCGAgccccgcGAcGCGCCccccUCCg -3'
miRNA:   3'- -GAGGaGCCa-UGCGCUa------CU-CGCGG----AGG- -5'
31000 5' -57 NC_006560.1 + 2993 0.66 0.86754
Target:  5'- aCUCCUCGGgcuCGgGGaccUG-GCGCaUCCa -3'
miRNA:   3'- -GAGGAGCCau-GCgCU---ACuCGCGgAGG- -5'
31000 5' -57 NC_006560.1 + 3297 0.71 0.639073
Target:  5'- -gCCgggCGGgcggGCGGUGAGCGCCgcgggCCg -3'
miRNA:   3'- gaGGa--GCCaug-CGCUACUCGCGGa----GG- -5'
31000 5' -57 NC_006560.1 + 4458 0.67 0.844634
Target:  5'- -gCCUCGuaGCGCcg-GcGCGCCUCCg -3'
miRNA:   3'- gaGGAGCcaUGCGcuaCuCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 7078 0.7 0.669245
Target:  5'- -aCCUCGcGgccCGCGAgaccGCGCCUCCu -3'
miRNA:   3'- gaGGAGC-Cau-GCGCUacu-CGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 9147 0.71 0.598803
Target:  5'- gUCUUCGGcgACGcCGAUGggaacgucgGGCGCCUCg -3'
miRNA:   3'- gAGGAGCCa-UGC-GCUAC---------UCGCGGAGg -5'
31000 5' -57 NC_006560.1 + 11147 0.66 0.881794
Target:  5'- -gCCcCGGggcgGCGCGgcGAGCGCgagagUUCCg -3'
miRNA:   3'- gaGGaGCCa---UGCGCuaCUCGCG-----GAGG- -5'
31000 5' -57 NC_006560.1 + 11228 0.66 0.881794
Target:  5'- -aCCgCGGUcUGCGAcGGGCGCCgcuuggCCc -3'
miRNA:   3'- gaGGaGCCAuGCGCUaCUCGCGGa-----GG- -5'
31000 5' -57 NC_006560.1 + 12344 0.71 0.618919
Target:  5'- -aCCUCGGggcugGCGgGgcGGGCGUCUCg -3'
miRNA:   3'- gaGGAGCCa----UGCgCuaCUCGCGGAGg -5'
31000 5' -57 NC_006560.1 + 12878 0.66 0.881794
Target:  5'- -aCCUCGGgcgGgagcagggugcuCGUGGUcGGCGCCUUCg -3'
miRNA:   3'- gaGGAGCCa--U------------GCGCUAcUCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 15354 0.69 0.761016
Target:  5'- -gCCggGGU-CGCGGUGAGgccgggacuccccccCGCCUCCu -3'
miRNA:   3'- gaGGagCCAuGCGCUACUC---------------GCGGAGG- -5'
31000 5' -57 NC_006560.1 + 16017 0.66 0.895189
Target:  5'- -aCCacCGGaGCGCGAcgGGGCGCCggcaCCc -3'
miRNA:   3'- gaGGa-GCCaUGCGCUa-CUCGCGGa---GG- -5'
31000 5' -57 NC_006560.1 + 17554 0.67 0.860102
Target:  5'- gUCCg-GGUACGCGAcgucgucggGGGCGUCaucgUCCg -3'
miRNA:   3'- gAGGagCCAUGCGCUa--------CUCGCGG----AGG- -5'
31000 5' -57 NC_006560.1 + 17815 0.69 0.737263
Target:  5'- uUCCUCGGUcgcgcccgcguagACGCGGcgGAGCugucgGCCggCCa -3'
miRNA:   3'- gAGGAGCCA-------------UGCGCUa-CUCG-----CGGa-GG- -5'
31000 5' -57 NC_006560.1 + 23673 0.66 0.88793
Target:  5'- -gCCU-GGUGCGCGAcgcgcUGAcgcucauGCGCCUgCg -3'
miRNA:   3'- gaGGAgCCAUGCGCU-----ACU-------CGCGGAgG- -5'
31000 5' -57 NC_006560.1 + 25881 0.67 0.860102
Target:  5'- gCUCC-CGccgGCGUGGgccGcGCGCCUCCg -3'
miRNA:   3'- -GAGGaGCca-UGCGCUa--CuCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 27404 0.67 0.852464
Target:  5'- cCUCCcgCGGcgGCGCGcgcGcGgGCCUCCg -3'
miRNA:   3'- -GAGGa-GCCa-UGCGCua-CuCgCGGAGG- -5'
31000 5' -57 NC_006560.1 + 29285 0.66 0.86754
Target:  5'- cCUCCUCGccggccCGCccgGAGCGCC-CCg -3'
miRNA:   3'- -GAGGAGCcau---GCGcuaCUCGCGGaGG- -5'
31000 5' -57 NC_006560.1 + 31120 0.79 0.233705
Target:  5'- -gCCUCGG-GCGCcggGGGCGCCUCCg -3'
miRNA:   3'- gaGGAGCCaUGCGcuaCUCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 31279 0.66 0.895189
Target:  5'- gCUCCUCGGggcucCGCcgcuc-CGCCUCCg -3'
miRNA:   3'- -GAGGAGCCau---GCGcuacucGCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.