miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31000 5' -57 NC_006560.1 + 34995 0.7 0.689227
Target:  5'- -gCCUCGGggcCGCGGgccggccGGGCGCCcccUCCg -3'
miRNA:   3'- gaGGAGCCau-GCGCUa------CUCGCGG---AGG- -5'
31000 5' -57 NC_006560.1 + 39451 0.66 0.86754
Target:  5'- -gCCaCGGcgcUGCGCGGUcGGCGCCgCCg -3'
miRNA:   3'- gaGGaGCC---AUGCGCUAcUCGCGGaGG- -5'
31000 5' -57 NC_006560.1 + 39656 0.66 0.895189
Target:  5'- uCUCCgcUCGGgcCGCGGcc-GCGCC-CCg -3'
miRNA:   3'- -GAGG--AGCCauGCGCUacuCGCGGaGG- -5'
31000 5' -57 NC_006560.1 + 42548 0.66 0.888601
Target:  5'- -gCCcCGGggucGCGCGggGAgGCGCCcgCCg -3'
miRNA:   3'- gaGGaGCCa---UGCGCuaCU-CGCGGa-GG- -5'
31000 5' -57 NC_006560.1 + 44236 0.66 0.874772
Target:  5'- cCUCCaccugCGGcccCGCGAgcGAG-GCCUCCg -3'
miRNA:   3'- -GAGGa----GCCau-GCGCUa-CUCgCGGAGG- -5'
31000 5' -57 NC_006560.1 + 44394 0.66 0.881794
Target:  5'- -cCCUCGG-AgGCGGagccGCGUCUCCg -3'
miRNA:   3'- gaGGAGCCaUgCGCUacu-CGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 45283 0.67 0.844634
Target:  5'- -cCCgggGGUACGCGcgGAGgaCGCCgUCCc -3'
miRNA:   3'- gaGGag-CCAUGCGCuaCUC--GCGG-AGG- -5'
31000 5' -57 NC_006560.1 + 45623 0.68 0.811509
Target:  5'- gUCCUCGGcGCGCuucgggacGAacgcGGGUGCCUCg -3'
miRNA:   3'- gAGGAGCCaUGCG--------CUa---CUCGCGGAGg -5'
31000 5' -57 NC_006560.1 + 45976 0.66 0.888601
Target:  5'- -aCCgagCGccACGCGGUaGGGCGCC-CCg -3'
miRNA:   3'- gaGGa--GCcaUGCGCUA-CUCGCGGaGG- -5'
31000 5' -57 NC_006560.1 + 46420 0.66 0.86754
Target:  5'- -aUCUCGGUAUgGCGucacUGGGCGUUUCUc -3'
miRNA:   3'- gaGGAGCCAUG-CGCu---ACUCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 47263 0.68 0.793969
Target:  5'- -gCCUCGGcgcCGCGGacccgaaaGAGCGCCUgCg -3'
miRNA:   3'- gaGGAGCCau-GCGCUa-------CUCGCGGAgG- -5'
31000 5' -57 NC_006560.1 + 51144 0.66 0.864589
Target:  5'- aUCCgcugccucgCGGcGCGCGAggccgccuuucugGGGCGCgUCCu -3'
miRNA:   3'- gAGGa--------GCCaUGCGCUa------------CUCGCGgAGG- -5'
31000 5' -57 NC_006560.1 + 51222 0.68 0.811509
Target:  5'- gUCCaguggcugUCGGUG-GCGGUGGGCGCgCgCCu -3'
miRNA:   3'- gAGG--------AGCCAUgCGCUACUCGCG-GaGG- -5'
31000 5' -57 NC_006560.1 + 51659 0.66 0.874772
Target:  5'- -cCCgcugCGGUACGCGu---GCGUgCUCCg -3'
miRNA:   3'- gaGGa---GCCAUGCGCuacuCGCG-GAGG- -5'
31000 5' -57 NC_006560.1 + 52330 0.66 0.874772
Target:  5'- gCUCgUCGG--CGCGGccgUGGGCGCCcugcggcagcgcUCCg -3'
miRNA:   3'- -GAGgAGCCauGCGCU---ACUCGCGG------------AGG- -5'
31000 5' -57 NC_006560.1 + 57283 0.67 0.820046
Target:  5'- -gCCUCGGagagagcgcCGCGggGGGCGuCCUCg -3'
miRNA:   3'- gaGGAGCCau-------GCGCuaCUCGC-GGAGg -5'
31000 5' -57 NC_006560.1 + 57326 0.67 0.85169
Target:  5'- cCUCUcggCGGUGCGCGggGcaggccgcggcgaAGCGgCCUCg -3'
miRNA:   3'- -GAGGa--GCCAUGCGCuaC-------------UCGC-GGAGg -5'
31000 5' -57 NC_006560.1 + 65943 0.72 0.588777
Target:  5'- gUCCggccgccagCGGUacaggcgggcgGCGCGGUGcGGCGCCUCg -3'
miRNA:   3'- gAGGa--------GCCA-----------UGCGCUAC-UCGCGGAGg -5'
31000 5' -57 NC_006560.1 + 66513 0.66 0.888601
Target:  5'- -gCCcCGGuagUugGCGGUGAcGUGCgUCCg -3'
miRNA:   3'- gaGGaGCC---AugCGCUACU-CGCGgAGG- -5'
31000 5' -57 NC_006560.1 + 72263 0.66 0.895189
Target:  5'- -cCCcCGGgaccGCGCGggGGGCGacgucgagaCCUCCg -3'
miRNA:   3'- gaGGaGCCa---UGCGCuaCUCGC---------GGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.