Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31000 | 5' | -57 | NC_006560.1 | + | 124852 | 0.68 | 0.775863 |
Target: 5'- gUCCUCGuGgACGCGcacacgggcaugGUGGGCGCgUCUc -3' miRNA: 3'- gAGGAGC-CaUGCGC------------UACUCGCGgAGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 84692 | 0.68 | 0.793969 |
Target: 5'- -gCCUgCGGcGCggGCGAcGGGCGCCUCg -3' miRNA: 3'- gaGGA-GCCaUG--CGCUaCUCGCGGAGg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 47263 | 0.68 | 0.793969 |
Target: 5'- -gCCUCGGcgcCGCGGacccgaaaGAGCGCCUgCg -3' miRNA: 3'- gaGGAGCCau-GCGCUa-------CUCGCGGAgG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 127556 | 0.68 | 0.793969 |
Target: 5'- -gCC-CGGUACGCGucGAGCGUgUCg -3' miRNA: 3'- gaGGaGCCAUGCGCuaCUCGCGgAGg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 102437 | 0.68 | 0.801056 |
Target: 5'- cCUCCUCGGccgcCGCGGccgccgucuccAGgGCCUCCa -3' miRNA: 3'- -GAGGAGCCau--GCGCUac---------UCgCGGAGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 102693 | 0.68 | 0.802814 |
Target: 5'- gCUCCUgGcGUcgGCGaCGAUGaAGCGCCUg- -3' miRNA: 3'- -GAGGAgC-CA--UGC-GCUAC-UCGCGGAgg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 107756 | 0.68 | 0.802814 |
Target: 5'- -aCCa-GGUGCGCGGcgagGAGCGCggCCa -3' miRNA: 3'- gaGGagCCAUGCGCUa---CUCGCGgaGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 103021 | 0.68 | 0.811509 |
Target: 5'- cCUCCgcgccCGGUcgACGCGcgGGGCGCgggcggCCg -3' miRNA: 3'- -GAGGa----GCCA--UGCGCuaCUCGCGga----GG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 51222 | 0.68 | 0.811509 |
Target: 5'- gUCCaguggcugUCGGUG-GCGGUGGGCGCgCgCCu -3' miRNA: 3'- gAGG--------AGCCAUgCGCUACUCGCG-GaGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 45623 | 0.68 | 0.811509 |
Target: 5'- gUCCUCGGcGCGCuucgggacGAacgcGGGUGCCUCg -3' miRNA: 3'- gAGGAGCCaUGCG--------CUa---CUCGCGGAGg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 57283 | 0.67 | 0.820046 |
Target: 5'- -gCCUCGGagagagcgcCGCGggGGGCGuCCUCg -3' miRNA: 3'- gaGGAGCCau-------GCGCuaCUCGC-GGAGg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 108113 | 0.67 | 0.836615 |
Target: 5'- gCUgCUCGGcgacCGCGccGAGCGCCagCg -3' miRNA: 3'- -GAgGAGCCau--GCGCuaCUCGCGGagG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 118588 | 0.67 | 0.836615 |
Target: 5'- gUCCcgCGGcaccacUACGCGAccgGGGCGCgCUUCg -3' miRNA: 3'- gAGGa-GCC------AUGCGCUa--CUCGCG-GAGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 100168 | 0.67 | 0.844634 |
Target: 5'- uUCacggCGGUggagagcagcGCGCgGGUGAGCGUCUCg -3' miRNA: 3'- gAGga--GCCA----------UGCG-CUACUCGCGGAGg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 88537 | 0.67 | 0.844634 |
Target: 5'- gCUCCUCGccgccgcaGUagACGCGcgGGGCGCg-CCu -3' miRNA: 3'- -GAGGAGC--------CA--UGCGCuaCUCGCGgaGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 4458 | 0.67 | 0.844634 |
Target: 5'- -gCCUCGuaGCGCcg-GcGCGCCUCCg -3' miRNA: 3'- gaGGAGCcaUGCGcuaCuCGCGGAGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 45283 | 0.67 | 0.844634 |
Target: 5'- -cCCgggGGUACGCGcgGAGgaCGCCgUCCc -3' miRNA: 3'- gaGGag-CCAUGCGCuaCUC--GCGG-AGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 57326 | 0.67 | 0.85169 |
Target: 5'- cCUCUcggCGGUGCGCGggGcaggccgcggcgaAGCGgCCUCg -3' miRNA: 3'- -GAGGa--GCCAUGCGCuaC-------------UCGC-GGAGg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 27404 | 0.67 | 0.852464 |
Target: 5'- cCUCCcgCGGcgGCGCGcgcGcGgGCCUCCg -3' miRNA: 3'- -GAGGa-GCCa-UGCGCua-CuCgCGGAGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 1102 | 0.67 | 0.852464 |
Target: 5'- gCUCCcCGGcgGCGCGAgccccgcGAcGCGCCccccUCCg -3' miRNA: 3'- -GAGGaGCCa-UGCGCUa------CU-CGCGG----AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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