miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31000 5' -57 NC_006560.1 + 79807 0.66 0.86754
Target:  5'- uCUCgaUGGgggGCGCGGUG-GCGCCg-- -3'
miRNA:   3'- -GAGgaGCCa--UGCGCUACuCGCGGagg -5'
31000 5' -57 NC_006560.1 + 117962 0.66 0.86754
Target:  5'- aCUUCUgcCGGUACGUG-UG-GCGCCUg- -3'
miRNA:   3'- -GAGGA--GCCAUGCGCuACuCGCGGAgg -5'
31000 5' -57 NC_006560.1 + 51144 0.66 0.864589
Target:  5'- aUCCgcugccucgCGGcGCGCGAggccgccuuucugGGGCGCgUCCu -3'
miRNA:   3'- gAGGa--------GCCaUGCGCUa------------CUCGCGgAGG- -5'
31000 5' -57 NC_006560.1 + 130207 0.66 0.864589
Target:  5'- gCUCUgccgcgacgcgcgCGGggACGCGGUGGcGCGCUUCg -3'
miRNA:   3'- -GAGGa------------GCCa-UGCGCUACU-CGCGGAGg -5'
31000 5' -57 NC_006560.1 + 17554 0.67 0.860102
Target:  5'- gUCCg-GGUACGCGAcgucgucggGGGCGUCaucgUCCg -3'
miRNA:   3'- gAGGagCCAUGCGCUa--------CUCGCGG----AGG- -5'
31000 5' -57 NC_006560.1 + 86265 0.67 0.860102
Target:  5'- -gCCcCGGcGCGCGcAUGGccGCGgCCUCCg -3'
miRNA:   3'- gaGGaGCCaUGCGC-UACU--CGC-GGAGG- -5'
31000 5' -57 NC_006560.1 + 133457 0.67 0.860102
Target:  5'- gUCCUCGGgccCGCGGgcuccGGgGCgUCCg -3'
miRNA:   3'- gAGGAGCCau-GCGCUac---UCgCGgAGG- -5'
31000 5' -57 NC_006560.1 + 25881 0.67 0.860102
Target:  5'- gCUCC-CGccgGCGUGGgccGcGCGCCUCCg -3'
miRNA:   3'- -GAGGaGCca-UGCGCUa--CuCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 135484 0.67 0.860102
Target:  5'- -cCCUCGGcccgguuuCGgGAUGAG-GCCUUCu -3'
miRNA:   3'- gaGGAGCCau------GCgCUACUCgCGGAGG- -5'
31000 5' -57 NC_006560.1 + 1102 0.67 0.852464
Target:  5'- gCUCCcCGGcgGCGCGAgccccgcGAcGCGCCccccUCCg -3'
miRNA:   3'- -GAGGaGCCa-UGCGCUa------CU-CGCGG----AGG- -5'
31000 5' -57 NC_006560.1 + 27404 0.67 0.852464
Target:  5'- cCUCCcgCGGcgGCGCGcgcGcGgGCCUCCg -3'
miRNA:   3'- -GAGGa-GCCa-UGCGCua-CuCgCGGAGG- -5'
31000 5' -57 NC_006560.1 + 57326 0.67 0.85169
Target:  5'- cCUCUcggCGGUGCGCGggGcaggccgcggcgaAGCGgCCUCg -3'
miRNA:   3'- -GAGGa--GCCAUGCGCuaC-------------UCGC-GGAGg -5'
31000 5' -57 NC_006560.1 + 45283 0.67 0.844634
Target:  5'- -cCCgggGGUACGCGcgGAGgaCGCCgUCCc -3'
miRNA:   3'- gaGGag-CCAUGCGCuaCUC--GCGG-AGG- -5'
31000 5' -57 NC_006560.1 + 4458 0.67 0.844634
Target:  5'- -gCCUCGuaGCGCcg-GcGCGCCUCCg -3'
miRNA:   3'- gaGGAGCcaUGCGcuaCuCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 88537 0.67 0.844634
Target:  5'- gCUCCUCGccgccgcaGUagACGCGcgGGGCGCg-CCu -3'
miRNA:   3'- -GAGGAGC--------CA--UGCGCuaCUCGCGgaGG- -5'
31000 5' -57 NC_006560.1 + 100168 0.67 0.844634
Target:  5'- uUCacggCGGUggagagcagcGCGCgGGUGAGCGUCUCg -3'
miRNA:   3'- gAGga--GCCA----------UGCG-CUACUCGCGGAGg -5'
31000 5' -57 NC_006560.1 + 118588 0.67 0.836615
Target:  5'- gUCCcgCGGcaccacUACGCGAccgGGGCGCgCUUCg -3'
miRNA:   3'- gAGGa-GCC------AUGCGCUa--CUCGCG-GAGG- -5'
31000 5' -57 NC_006560.1 + 108113 0.67 0.836615
Target:  5'- gCUgCUCGGcgacCGCGccGAGCGCCagCg -3'
miRNA:   3'- -GAgGAGCCau--GCGCuaCUCGCGGagG- -5'
31000 5' -57 NC_006560.1 + 57283 0.67 0.820046
Target:  5'- -gCCUCGGagagagcgcCGCGggGGGCGuCCUCg -3'
miRNA:   3'- gaGGAGCCau-------GCGCuaCUCGC-GGAGg -5'
31000 5' -57 NC_006560.1 + 45623 0.68 0.811509
Target:  5'- gUCCUCGGcGCGCuucgggacGAacgcGGGUGCCUCg -3'
miRNA:   3'- gAGGAGCCaUGCG--------CUa---CUCGCGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.